miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 356 0.66 0.795638
Target:  5'- cCCGccuuuuuuGCGCGCgCGcGCGCCcGCGGGggGCc -3'
miRNA:   3'- -GGC--------UGCGCG-GCaCGCGG-CGCUCa-UGc -5'
5996 5' -60.1 NC_001806.1 + 4491 0.66 0.795638
Target:  5'- cCCGACG-GCCc-GCGCCuCGcGUGCGu -3'
miRNA:   3'- -GGCUGCgCGGcaCGCGGcGCuCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 152066 0.66 0.795638
Target:  5'- cCCGccuuuuuuGCGCGCgCGcGCGCCcGCGGGggGCc -3'
miRNA:   3'- -GGC--------UGCGCG-GCaCGCGG-CGCUCa-UGc -5'
5996 5' -60.1 NC_001806.1 + 122516 0.66 0.804183
Target:  5'- uCCaGCGUGCCGUacGUccgGCCGUGGGUGg- -3'
miRNA:   3'- -GGcUGCGCGGCA--CG---CGGCGCUCAUgc -5'
5996 5' -60.1 NC_001806.1 + 136370 0.66 0.804183
Target:  5'- gCCGGCGCGCUccGCGgccuCCGCGAccGUGg- -3'
miRNA:   3'- -GGCUGCGCGGcaCGC----GGCGCU--CAUgc -5'
5996 5' -60.1 NC_001806.1 + 151534 0.66 0.778151
Target:  5'- aCGGCGC-CCGUGgGCC-CGGGcgGCc -3'
miRNA:   3'- gGCUGCGcGGCACgCGGcGCUCa-UGc -5'
5996 5' -60.1 NC_001806.1 + 147987 0.66 0.778151
Target:  5'- gCCaGACGCcccCCGcgGCGCCGCGGcucGCGa -3'
miRNA:   3'- -GG-CUGCGc--GGCa-CGCGGCGCUca-UGC- -5'
5996 5' -60.1 NC_001806.1 + 86305 0.66 0.760189
Target:  5'- gUGAUGCGCCGauggGCGUCuaCGAGgACGg -3'
miRNA:   3'- gGCUGCGCGGCa---CGCGGc-GCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 102832 0.66 0.760189
Target:  5'- cCCGACGaGCCGgucGCcCCGCGGcccgcGUACa -3'
miRNA:   3'- -GGCUGCgCGGCa--CGcGGCGCU-----CAUGc -5'
5996 5' -60.1 NC_001806.1 + 19985 0.66 0.766526
Target:  5'- uCCGAUGCgaucccgaucccgaGCCGggGCGUCGCGA-UGCc -3'
miRNA:   3'- -GGCUGCG--------------CGGCa-CGCGGCGCUcAUGc -5'
5996 5' -60.1 NC_001806.1 + 4661 0.66 0.769226
Target:  5'- gCGGCuGgGCCGgcggGCGCgGCGAcagGCGg -3'
miRNA:   3'- gGCUG-CgCGGCa---CGCGgCGCUca-UGC- -5'
5996 5' -60.1 NC_001806.1 + 4938 0.66 0.769226
Target:  5'- gCCGGCGU-CgGUGCccGCCGCGGGgGCc -3'
miRNA:   3'- -GGCUGCGcGgCACG--CGGCGCUCaUGc -5'
5996 5' -60.1 NC_001806.1 + 106546 0.66 0.769226
Target:  5'- gCGAugcCGCGCUgGUGCGCgCGCGc-UACGg -3'
miRNA:   3'- gGCU---GCGCGG-CACGCG-GCGCucAUGC- -5'
5996 5' -60.1 NC_001806.1 + 132170 0.66 0.769226
Target:  5'- cCCGACGCGCgGcugGCGUgggCGCGccugGCGg -3'
miRNA:   3'- -GGCUGCGCGgCa--CGCG---GCGCuca-UGC- -5'
5996 5' -60.1 NC_001806.1 + 63802 0.66 0.774595
Target:  5'- uCgGACGCGCgcucucuuuguUGUGCGCCgccaccaGCGAGUcaaggaccuugaggGCGg -3'
miRNA:   3'- -GgCUGCGCG-----------GCACGCGG-------CGCUCA--------------UGC- -5'
5996 5' -60.1 NC_001806.1 + 76270 0.66 0.775486
Target:  5'- gCGugGCGCUGgaccugGCcgccGCCGCGgaggagauauccgcGGUGCGc -3'
miRNA:   3'- gGCugCGCGGCa-----CG----CGGCGC--------------UCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 24224 0.66 0.778151
Target:  5'- gCCGACGgGCCcgcgGUGUCGCGGcaGCa -3'
miRNA:   3'- -GGCUGCgCGGca--CGCGGCGCUcaUGc -5'
5996 5' -60.1 NC_001806.1 + 42006 0.66 0.778151
Target:  5'- -gGGCuGCuCCGUGCugGCCGCgGGGUugGg -3'
miRNA:   3'- ggCUG-CGcGGCACG--CGGCG-CUCAugC- -5'
5996 5' -60.1 NC_001806.1 + 50658 0.66 0.778151
Target:  5'- -gGACGCGCaccgGCGCCGgGAcgACGc -3'
miRNA:   3'- ggCUGCGCGgca-CGCGGCgCUcaUGC- -5'
5996 5' -60.1 NC_001806.1 + 144573 0.66 0.778151
Target:  5'- uCCgGGCGCGuCCGgGUGCCGCGGc---- -3'
miRNA:   3'- -GG-CUGCGC-GGCaCGCGGCGCUcaugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.