Results 81 - 100 of 126 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 140688 | 0.67 | 0.732491 |
Target: 5'- gCGGCGC-CCGcGUGCCGCGcuGGaACGc -3' miRNA: 3'- gGCUGCGcGGCaCGCGGCGC--UCaUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 138773 | 0.67 | 0.729678 |
Target: 5'- gCCGACGCaggcgucgguaaugGCCGacgcagGCGCCcccgGCGAgcGUGCGu -3' miRNA: 3'- -GGCUGCG--------------CGGCa-----CGCGG----CGCU--CAUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 49277 | 0.67 | 0.723089 |
Target: 5'- cCCG-UGCGCCGUcgacgggaagGC-CCGCGAGcccgACGa -3' miRNA: 3'- -GGCuGCGCGGCA----------CGcGGCGCUCa---UGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 49519 | 0.67 | 0.723089 |
Target: 5'- -gGugGCGCCGU-CGCCGCuguuccuagagGAGcUGCa -3' miRNA: 3'- ggCugCGCGGCAcGCGGCG-----------CUC-AUGc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 1616 | 0.67 | 0.723089 |
Target: 5'- gCGGCGCGCCcaggccccagcGcGCGCagGCGGcGUGCGa -3' miRNA: 3'- gGCUGCGCGG-----------CaCGCGg-CGCU-CAUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 75499 | 0.67 | 0.713617 |
Target: 5'- aCCGGCGCGCgGgaaaGCcUCGCGGGccACGa -3' miRNA: 3'- -GGCUGCGCGgCa---CGcGGCGCUCa-UGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 144369 | 0.67 | 0.713617 |
Target: 5'- -gGGCGCG-CGUGC-CCGCGAGa--- -3' miRNA: 3'- ggCUGCGCgGCACGcGGCGCUCaugc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 24071 | 0.67 | 0.741813 |
Target: 5'- cCCGACGUGUCG-GCGCUggGCGcacAGgGCGu -3' miRNA: 3'- -GGCUGCGCGGCaCGCGG--CGC---UCaUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 40042 | 0.67 | 0.741813 |
Target: 5'- aUGGCGUGCCG-GCGUCaaugguaaacaGCGuGUGCa -3' miRNA: 3'- gGCUGCGCGGCaCGCGG-----------CGCuCAUGc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 143646 | 0.67 | 0.741813 |
Target: 5'- uCCGGCGCGCCGcccccCGCCGCu------ -3' miRNA: 3'- -GGCUGCGCGGCac---GCGGCGcucaugc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 19985 | 0.66 | 0.766526 |
Target: 5'- uCCGAUGCgaucccgaucccgaGCCGggGCGUCGCGA-UGCc -3' miRNA: 3'- -GGCUGCG--------------CGGCa-CGCGGCGCUcAUGc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 102832 | 0.66 | 0.760189 |
Target: 5'- cCCGACGaGCCGgucGCcCCGCGGcccgcGUACa -3' miRNA: 3'- -GGCUGCgCGGCa--CGcGGCGCU-----CAUGc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 86305 | 0.66 | 0.760189 |
Target: 5'- gUGAUGCGCCGauggGCGUCuaCGAGgACGg -3' miRNA: 3'- gGCUGCGCGGCa---CGCGGc-GCUCaUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 6138 | 0.66 | 0.760189 |
Target: 5'- aCCGACGC-CCGcagacgGCGCCGgccacgaacgaCGGGaGCGg -3' miRNA: 3'- -GGCUGCGcGGCa-----CGCGGC-----------GCUCaUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 5582 | 0.67 | 0.751049 |
Target: 5'- cCCGACGCcggcacGCCGgggGCccgugGCCGCGGcccGUugGu -3' miRNA: 3'- -GGCUGCG------CGGCa--CG-----CGGCGCU---CAugC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 138402 | 0.67 | 0.751049 |
Target: 5'- -gGACGCGgggcaCaUGCGCUGCGAgGUGCa -3' miRNA: 3'- ggCUGCGCg----GcACGCGGCGCU-CAUGc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 114624 | 0.67 | 0.751049 |
Target: 5'- uCCGACagccCGUCGUGCagcacguCCGCGAGaGCGc -3' miRNA: 3'- -GGCUGc---GCGGCACGc------GGCGCUCaUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 9753 | 0.67 | 0.751049 |
Target: 5'- aCCGcaGgGCGCCGUGgGuuGgGGGcGCGu -3' miRNA: 3'- -GGC--UgCGCGGCACgCggCgCUCaUGC- -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 121846 | 0.67 | 0.741813 |
Target: 5'- cCCGACcaGCGCCGggugGCGCCuGUGuGUc-- -3' miRNA: 3'- -GGCUG--CGCGGCa---CGCGG-CGCuCAugc -5' |
|||||||
5996 | 5' | -60.1 | NC_001806.1 | + | 4312 | 0.67 | 0.741813 |
Target: 5'- cCCGugGCGUCGcgGCcggccaccGCCGCGcGGgcccgGCGg -3' miRNA: 3'- -GGCugCGCGGCa-CG--------CGGCGC-UCa----UGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home