miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5996 5' -60.1 NC_001806.1 + 4491 0.66 0.795638
Target:  5'- cCCGACG-GCCc-GCGCCuCGcGUGCGu -3'
miRNA:   3'- -GGCUGCgCGGcaCGCGGcGCuCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 356 0.66 0.795638
Target:  5'- cCCGccuuuuuuGCGCGCgCGcGCGCCcGCGGGggGCc -3'
miRNA:   3'- -GGC--------UGCGCG-GCaCGCGG-CGCUCa-UGc -5'
5996 5' -60.1 NC_001806.1 + 151440 0.66 0.795638
Target:  5'- aCCGGCgggggGCGgCGgcgggGCgGCCGCGGGcGCGc -3'
miRNA:   3'- -GGCUG-----CGCgGCa----CG-CGGCGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 54928 0.66 0.795638
Target:  5'- gUCGGgGUGCuCGUGCGuCUGCGuGU-CGa -3'
miRNA:   3'- -GGCUgCGCG-GCACGC-GGCGCuCAuGC- -5'
5996 5' -60.1 NC_001806.1 + 2504 0.66 0.786958
Target:  5'- gCCGcACGCgGCC-UGgGCgGCGGGgGCGg -3'
miRNA:   3'- -GGC-UGCG-CGGcACgCGgCGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 77660 0.66 0.786958
Target:  5'- cUCGGCGCGCUGcugaUGUGUCcCGAG-GCGg -3'
miRNA:   3'- -GGCUGCGCGGC----ACGCGGcGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 27278 0.66 0.786958
Target:  5'- aUCGGCG-GCCGccaGCGCgGCGGGgccCGg -3'
miRNA:   3'- -GGCUGCgCGGCa--CGCGgCGCUCau-GC- -5'
5996 5' -60.1 NC_001806.1 + 148083 0.66 0.786958
Target:  5'- cCCGAUggGCGCCGagggggGCGCUGUccGAGccGCGg -3'
miRNA:   3'- -GGCUG--CGCGGCa-----CGCGGCG--CUCa-UGC- -5'
5996 5' -60.1 NC_001806.1 + 21994 0.66 0.794776
Target:  5'- gCCGACGCGaccuCCG-GCGCCuucuacGCGcgcuaucgcgacgGGUACGu -3'
miRNA:   3'- -GGCUGCGC----GGCaCGCGG------CGC-------------UCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 3604 0.66 0.795638
Target:  5'- cCCGGCGgGCacCGcGCGCuCGCccGGUGCGg -3'
miRNA:   3'- -GGCUGCgCG--GCaCGCG-GCGc-UCAUGC- -5'
5996 5' -60.1 NC_001806.1 + 21335 0.67 0.741813
Target:  5'- gCCGGgGaCGCCGUcuCGCCGCGAcaGCu -3'
miRNA:   3'- -GGCUgC-GCGGCAc-GCGGCGCUcaUGc -5'
5996 5' -60.1 NC_001806.1 + 24071 0.67 0.741813
Target:  5'- cCCGACGUGUCG-GCGCUggGCGcacAGgGCGu -3'
miRNA:   3'- -GGCUGCGCGGCaCGCGG--CGC---UCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 40042 0.67 0.741813
Target:  5'- aUGGCGUGCCG-GCGUCaaugguaaacaGCGuGUGCa -3'
miRNA:   3'- gGCUGCGCGGCaCGCGG-----------CGCuCAUGc -5'
5996 5' -60.1 NC_001806.1 + 143646 0.67 0.741813
Target:  5'- uCCGGCGCGCCGcccccCGCCGCu------ -3'
miRNA:   3'- -GGCUGCGCGGCac---GCGGCGcucaugc -5'
5996 5' -60.1 NC_001806.1 + 4312 0.67 0.741813
Target:  5'- cCCGugGCGUCGcgGCcggccaccGCCGCGcGGgcccgGCGg -3'
miRNA:   3'- -GGCugCGCGGCa-CG--------CGGCGC-UCa----UGC- -5'
5996 5' -60.1 NC_001806.1 + 121846 0.67 0.741813
Target:  5'- cCCGACcaGCGCCGggugGCGCCuGUGuGUc-- -3'
miRNA:   3'- -GGCUG--CGCGGCa---CGCGG-CGCuCAugc -5'
5996 5' -60.1 NC_001806.1 + 9753 0.67 0.751049
Target:  5'- aCCGcaGgGCGCCGUGgGuuGgGGGcGCGu -3'
miRNA:   3'- -GGC--UgCGCGGCACgCggCgCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 114624 0.67 0.751049
Target:  5'- uCCGACagccCGUCGUGCagcacguCCGCGAGaGCGc -3'
miRNA:   3'- -GGCUGc---GCGGCACGc------GGCGCUCaUGC- -5'
5996 5' -60.1 NC_001806.1 + 138402 0.67 0.751049
Target:  5'- -gGACGCGgggcaCaUGCGCUGCGAgGUGCa -3'
miRNA:   3'- ggCUGCGCg----GcACGCGGCGCU-CAUGc -5'
5996 5' -60.1 NC_001806.1 + 4072 0.67 0.741813
Target:  5'- aCGGC-CGCCGggGCGCC-CGAGgccuCGa -3'
miRNA:   3'- gGCUGcGCGGCa-CGCGGcGCUCau--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.