miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5997 5' -53 NC_001806.1 + 99597 0.66 0.983346
Target:  5'- gGGCUcCGUCGGUAgaggggCgcgcGUCUGG-GUGGa -3'
miRNA:   3'- -CCGA-GUAGCCGUa-----Ga---CAGGCCaUACC- -5'
5997 5' -53 NC_001806.1 + 44652 0.66 0.979171
Target:  5'- cGC-CcUCGGCGUCgcgCCGGUA-GGg -3'
miRNA:   3'- cCGaGuAGCCGUAGacaGGCCAUaCC- -5'
5997 5' -53 NC_001806.1 + 4808 0.66 0.979171
Target:  5'- cGGCUCGaaaGGCGgggGUCCGGggcGGc -3'
miRNA:   3'- -CCGAGUag-CCGUagaCAGGCCauaCC- -5'
5997 5' -53 NC_001806.1 + 13991 0.66 0.971521
Target:  5'- gGGaUUCGUCGGUGUg-GUC-GGUAUGGa -3'
miRNA:   3'- -CC-GAGUAGCCGUAgaCAGgCCAUACC- -5'
5997 5' -53 NC_001806.1 + 106503 0.67 0.965411
Target:  5'- uGGCcCGUgGGCAUCUGgacgaCGGg--GGa -3'
miRNA:   3'- -CCGaGUAgCCGUAGACag---GCCauaCC- -5'
5997 5' -53 NC_001806.1 + 61332 0.67 0.965411
Target:  5'- aGGCUCAgCGGaaagCUGgcgUCGGgggGUGGg -3'
miRNA:   3'- -CCGAGUaGCCgua-GACa--GGCCa--UACC- -5'
5997 5' -53 NC_001806.1 + 131845 0.67 0.958434
Target:  5'- cGGCUCcgCGGaCGUCUccGUCCaGGccgucGUGGc -3'
miRNA:   3'- -CCGAGuaGCC-GUAGA--CAGG-CCa----UACC- -5'
5997 5' -53 NC_001806.1 + 151329 0.67 0.958434
Target:  5'- cGGCUCGggCGGgGggCUGUCCGGc---- -3'
miRNA:   3'- -CCGAGUa-GCCgUa-GACAGGCCauacc -5'
5997 5' -53 NC_001806.1 + 142126 0.69 0.915426
Target:  5'- gGGgUCGUCGGCGUCUG-CUuuuUGUGGc -3'
miRNA:   3'- -CCgAGUAGCCGUAGACaGGcc-AUACC- -5'
5997 5' -53 NC_001806.1 + 65325 0.69 0.909438
Target:  5'- gGGgaCGUCGGcCGUCUGgguaCCGGUAg-- -3'
miRNA:   3'- -CCgaGUAGCC-GUAGACa---GGCCAUacc -5'
5997 5' -53 NC_001806.1 + 52524 0.7 0.896744
Target:  5'- cGGCUCGU-GGCGUCUcgCCGGacgacGUGGu -3'
miRNA:   3'- -CCGAGUAgCCGUAGAcaGGCCa----UACC- -5'
5997 5' -53 NC_001806.1 + 3014 0.7 0.875951
Target:  5'- aGCgCGUCGGCGgc-GUCCGGUGcgcUGGc -3'
miRNA:   3'- cCGaGUAGCCGUagaCAGGCCAU---ACC- -5'
5997 5' -53 NC_001806.1 + 42633 0.7 0.86857
Target:  5'- cGCcgCggCGGCGUCgcGUCCGGUGcGGg -3'
miRNA:   3'- cCGa-GuaGCCGUAGa-CAGGCCAUaCC- -5'
5997 5' -53 NC_001806.1 + 65789 0.72 0.802288
Target:  5'- gGGgaCGUCGGCGg--GUCCGGcgagugGUGGg -3'
miRNA:   3'- -CCgaGUAGCCGUagaCAGGCCa-----UACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.