Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
600 | 3' | -49.5 | AC_000017.1 | + | 6632 | 0.66 | 0.901831 |
Target: 5'- -gUUG-CCCGGGaucuuuaccguggACGCGGAccccccggacgAGACGCa -3' miRNA: 3'- gaAACuGGGCCU-------------UGCGCCU-----------UUUGUGg -5' |
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600 | 3' | -49.5 | AC_000017.1 | + | 25532 | 0.66 | 0.902554 |
Target: 5'- ---cGGCCaCGGAGCGCucguuGAAgGCCg -3' miRNA: 3'- gaaaCUGG-GCCUUGCGccu--UUUgUGG- -5' |
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600 | 3' | -49.5 | AC_000017.1 | + | 18988 | 0.66 | 0.909612 |
Target: 5'- ---cGuCUCGGuGGCGCGGGcgaacuGCACCa -3' miRNA: 3'- gaaaCuGGGCC-UUGCGCCUuu----UGUGG- -5' |
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600 | 3' | -49.5 | AC_000017.1 | + | 5404 | 0.67 | 0.869647 |
Target: 5'- ----aGCCCGGAGCGCaccccuuCACCg -3' miRNA: 3'- gaaacUGGGCCUUGCGccuuuu-GUGG- -5' |
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600 | 3' | -49.5 | AC_000017.1 | + | 6043 | 0.67 | 0.85401 |
Target: 5'- ----cACCCGGucACGUGGcauACACCu -3' miRNA: 3'- gaaacUGGGCCu-UGCGCCuuuUGUGG- -5' |
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600 | 3' | -49.5 | AC_000017.1 | + | 466 | 1.14 | 0.001328 |
Target: 5'- aCUUUGACCCGGAACGCGGAAAACACCu -3' miRNA: 3'- -GAAACUGGGCCUUGCGCCUUUUGUGG- -5' |
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600 | 3' | -49.5 | AC_000017.1 | + | 11251 | 0.72 | 0.592386 |
Target: 5'- ---gGGCCCGGcgcCGCGGggGuucguaauCACCa -3' miRNA: 3'- gaaaCUGGGCCuu-GCGCCuuUu-------GUGG- -5' |
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600 | 3' | -49.5 | AC_000017.1 | + | 27367 | 0.71 | 0.639076 |
Target: 5'- -gUUGACCCGGGauaucAUGUGGGGucccGCGCUc -3' miRNA: 3'- gaAACUGGGCCU-----UGCGCCUUu---UGUGG- -5' |
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600 | 3' | -49.5 | AC_000017.1 | + | 33722 | 0.7 | 0.708634 |
Target: 5'- uUUUGGCCagcugguuuaGGAugGUGGuggauGGCGCCa -3' miRNA: 3'- gAAACUGGg---------CCUugCGCCuu---UUGUGG- -5' |
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600 | 3' | -49.5 | AC_000017.1 | + | 13980 | 0.7 | 0.718875 |
Target: 5'- cCUUUGACgaCGGGugggcggGCGCGGGccGGGCACa -3' miRNA: 3'- -GAAACUGg-GCCU-------UGCGCCU--UUUGUGg -5' |
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600 | 3' | -49.5 | AC_000017.1 | + | 8971 | 0.7 | 0.742449 |
Target: 5'- ---cGAgCCGG-ACGCGGAGAucuCCa -3' miRNA: 3'- gaaaCUgGGCCuUGCGCCUUUuguGG- -5' |
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600 | 3' | -49.5 | AC_000017.1 | + | 17067 | 0.69 | 0.800214 |
Target: 5'- gCUUUaGGCCgcgcuuuucuucggaCGGGcaaGCGCGGgcAGCACCu -3' miRNA: 3'- -GAAA-CUGG---------------GCCU---UGCGCCuuUUGUGG- -5' |
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600 | 3' | -49.5 | AC_000017.1 | + | 22831 | 0.68 | 0.816312 |
Target: 5'- ---gGACCUGG-ACGCGGAucuGAUcuCCg -3' miRNA: 3'- gaaaCUGGGCCuUGCGCCUu--UUGu-GG- -5' |
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600 | 3' | -49.5 | AC_000017.1 | + | 35934 | 0.68 | 0.835644 |
Target: 5'- --gUGGCgCGGGGCGUGGGAAcgGgGCg -3' miRNA: 3'- gaaACUGgGCCUUGCGCCUUU--UgUGg -5' |
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600 | 3' | -49.5 | AC_000017.1 | + | 25738 | 0.66 | 0.909612 |
Target: 5'- --gUGACCCcaaAGCgGCGGAGGGCAUUc -3' miRNA: 3'- gaaACUGGGcc-UUG-CGCCUUUUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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