miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
600 3' -49.5 AC_000017.1 + 68 0.68 0.835644
Target:  5'- --gUGGCgCGGGGCGUGGGAAcgGgGCg -3'
miRNA:   3'- gaaACUGgGCCUUGCGCCUUU--UgUGg -5'
600 3' -49.5 AC_000017.1 + 362 0.68 0.844953
Target:  5'- aCUUUGACCguuuACGUGGAGAcuCGCCc -3'
miRNA:   3'- -GAAACUGGgccuUGCGCCUUUu-GUGG- -5'
600 3' -49.5 AC_000017.1 + 466 1.14 0.001328
Target:  5'- aCUUUGACCCGGAACGCGGAAAACACCu -3'
miRNA:   3'- -GAAACUGGGCCUUGCGCCUUUUGUGG- -5'
600 3' -49.5 AC_000017.1 + 3755 0.67 0.877129
Target:  5'- -cUUGACCUacgagaccgugucuGGAACGCcguuGGAGACugCa -3'
miRNA:   3'- gaAACUGGG--------------CCUUGCGc---CUUUUGugG- -5'
600 3' -49.5 AC_000017.1 + 5336 0.67 0.871329
Target:  5'- --aUGACCCuGGccCGUcuGGAcGAGCACCg -3'
miRNA:   3'- gaaACUGGG-CCuuGCG--CCU-UUUGUGG- -5'
600 3' -49.5 AC_000017.1 + 5404 0.67 0.869647
Target:  5'- ----aGCCCGGAGCGCaccccuuCACCg -3'
miRNA:   3'- gaaacUGGGCCUUGCGccuuuu-GUGG- -5'
600 3' -49.5 AC_000017.1 + 5491 0.67 0.890629
Target:  5'- --aUGGCCCuuGGCGCGcagcuugcccuuggaGGAGGCGCCg -3'
miRNA:   3'- gaaACUGGGccUUGCGC---------------CUUUUGUGG- -5'
600 3' -49.5 AC_000017.1 + 6043 0.67 0.85401
Target:  5'- ----cACCCGGucACGUGGcauACACCu -3'
miRNA:   3'- gaaacUGGGCCu-UGCGCCuuuUGUGG- -5'
600 3' -49.5 AC_000017.1 + 6632 0.66 0.901831
Target:  5'- -gUUG-CCCGGGaucuuuaccguggACGCGGAccccccggacgAGACGCa -3'
miRNA:   3'- gaAACuGGGCCU-------------UGCGCCU-----------UUUGUGg -5'
600 3' -49.5 AC_000017.1 + 8971 0.7 0.742449
Target:  5'- ---cGAgCCGG-ACGCGGAGAucuCCa -3'
miRNA:   3'- gaaaCUgGGCCuUGCGCCUUUuguGG- -5'
600 3' -49.5 AC_000017.1 + 9266 0.67 0.887529
Target:  5'- ---aGGCCaUGGAGCGCcuugaggccuuGGggGAUAUCa -3'
miRNA:   3'- gaaaCUGG-GCCUUGCG-----------CCuuUUGUGG- -5'
600 3' -49.5 AC_000017.1 + 9519 0.68 0.816312
Target:  5'- ---cGGCCguucucgcgGGGGCGCaguuGGAAGACGCCg -3'
miRNA:   3'- gaaaCUGGg--------CCUUGCG----CCUUUUGUGG- -5'
600 3' -49.5 AC_000017.1 + 9724 0.66 0.895191
Target:  5'- ---cGAUCCGGucGAUGCGGAcu-CGCUc -3'
miRNA:   3'- gaaaCUGGGCC--UUGCGCCUuuuGUGG- -5'
600 3' -49.5 AC_000017.1 + 11245 0.69 0.796108
Target:  5'- ---gGGCCUGG--CGCGGcuaGGAGCGCCc -3'
miRNA:   3'- gaaaCUGGGCCuuGCGCC---UUUUGUGG- -5'
600 3' -49.5 AC_000017.1 + 11251 0.72 0.592386
Target:  5'- ---gGGCCCGGcgcCGCGGggGuucguaauCACCa -3'
miRNA:   3'- gaaaCUGGGCCuu-GCGCCuuUu-------GUGG- -5'
600 3' -49.5 AC_000017.1 + 11451 0.66 0.916362
Target:  5'- aCUUUGAgCCCGacGCGCGGAccgGGAUuaguCCc -3'
miRNA:   3'- -GAAACU-GGGCcuUGCGCCU---UUUGu---GG- -5'
600 3' -49.5 AC_000017.1 + 12128 0.66 0.902554
Target:  5'- aCUUUGACgCGG-GCGCuGAccuGCGCUg -3'
miRNA:   3'- -GAAACUGgGCCuUGCGcCUuu-UGUGG- -5'
600 3' -49.5 AC_000017.1 + 12193 0.67 0.85401
Target:  5'- ---gGACCUGGGcugGCGGu-GGCACCc -3'
miRNA:   3'- gaaaCUGGGCCUug-CGCCuuUUGUGG- -5'
600 3' -49.5 AC_000017.1 + 12332 0.72 0.592386
Target:  5'- ---gGACCCGGcggUGCGGGcgGCGCUg -3'
miRNA:   3'- gaaaCUGGGCCuu-GCGCCUuuUGUGG- -5'
600 3' -49.5 AC_000017.1 + 13980 0.7 0.718875
Target:  5'- cCUUUGACgaCGGGugggcggGCGCGGGccGGGCACa -3'
miRNA:   3'- -GAAACUGg-GCCU-------UGCGCCU--UUUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.