miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6000 3' -55.9 NC_001806.1 + 77411 0.66 0.894505
Target:  5'- gCGCCccUGCUCGUggauCUucgCGCCCUAGa -3'
miRNA:   3'- -GCGGucACGAGCGu---GAa--GCGGGAUUa -5'
6000 3' -55.9 NC_001806.1 + 140691 0.66 0.887686
Target:  5'- gCGCCcgcGUGC-CGCGCUggaaCGCCCc--- -3'
miRNA:   3'- -GCGGu--CACGaGCGUGAa---GCGGGauua -5'
6000 3' -55.9 NC_001806.1 + 95644 0.66 0.887686
Target:  5'- uCGCCAacgGCUuugcggcgcgcgCGCGCUUcugCGCCCUGAc -3'
miRNA:   3'- -GCGGUca-CGA------------GCGUGAA---GCGGGAUUa -5'
6000 3' -55.9 NC_001806.1 + 121408 0.66 0.887686
Target:  5'- aGCCGG-GCgCGUGCUgCGCCUUGGg -3'
miRNA:   3'- gCGGUCaCGaGCGUGAaGCGGGAUUa -5'
6000 3' -55.9 NC_001806.1 + 53405 0.66 0.880634
Target:  5'- aGCCGGUGaaCGC-CUcCGCCCg--- -3'
miRNA:   3'- gCGGUCACgaGCGuGAaGCGGGauua -5'
6000 3' -55.9 NC_001806.1 + 2956 0.67 0.858133
Target:  5'- gGCCGGgacuCUUGCGCUUgCGCCCc--- -3'
miRNA:   3'- gCGGUCac--GAGCGUGAA-GCGGGauua -5'
6000 3' -55.9 NC_001806.1 + 24445 0.67 0.850203
Target:  5'- gCGCUAccgcGUGCgcaCGCGCUUCGgCCCg--- -3'
miRNA:   3'- -GCGGU----CACGa--GCGUGAAGC-GGGauua -5'
6000 3' -55.9 NC_001806.1 + 135630 0.68 0.770607
Target:  5'- gCGCCGGaGCUCGCGgUcgCGCuCCUGc- -3'
miRNA:   3'- -GCGGUCaCGAGCGUgAa-GCG-GGAUua -5'
6000 3' -55.9 NC_001806.1 + 5989 0.69 0.751286
Target:  5'- aCGCgaAGcGUUCGCACUUCGUCCcAAUa -3'
miRNA:   3'- -GCGg-UCaCGAGCGUGAAGCGGGaUUA- -5'
6000 3' -55.9 NC_001806.1 + 30324 0.69 0.731532
Target:  5'- gCGCCGuGUGCcccagUCGCAC-UCGuCCCUGGc -3'
miRNA:   3'- -GCGGU-CACG-----AGCGUGaAGC-GGGAUUa -5'
6000 3' -55.9 NC_001806.1 + 75222 0.7 0.691037
Target:  5'- gGCC-GUGCgggCGCACcgCGUCCUGGUc -3'
miRNA:   3'- gCGGuCACGa--GCGUGaaGCGGGAUUA- -5'
6000 3' -55.9 NC_001806.1 + 89664 0.73 0.506589
Target:  5'- aCGCgaAGcGUUCGCACUUUGUCCUAAUa -3'
miRNA:   3'- -GCGg-UCaCGAGCGUGAAGCGGGAUUA- -5'
6000 3' -55.9 NC_001806.1 + 20211 1.06 0.003686
Target:  5'- gCGCCAGUGCUCGCACUUCGCCCUAAUa -3'
miRNA:   3'- -GCGGUCACGAGCGUGAAGCGGGAUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.