miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6000 5' -49.5 NC_001806.1 + 147623 0.69 0.976768
Target:  5'- ----aGGGACG-AGUGCGAcuggggcacacgGCGCgcgUCc -3'
miRNA:   3'- uauaaCCCUGCuUCACGCU------------UGCGa--AG- -5'
6000 5' -49.5 NC_001806.1 + 141327 0.68 0.98151
Target:  5'- ----aGGGGCGAcgGGUGCGAaaacuugaggACGCa-- -3'
miRNA:   3'- uauaaCCCUGCU--UCACGCU----------UGCGaag -5'
6000 5' -49.5 NC_001806.1 + 137594 0.69 0.979239
Target:  5'- ----gGGGGCGAGGaguUGCGGAacgaGUUUCg -3'
miRNA:   3'- uauaaCCCUGCUUC---ACGCUUg---CGAAG- -5'
6000 5' -49.5 NC_001806.1 + 128931 0.7 0.964708
Target:  5'- ----gGGGACGAcgAGUGCGAACaGUa-- -3'
miRNA:   3'- uauaaCCCUGCU--UCACGCUUG-CGaag -5'
6000 5' -49.5 NC_001806.1 + 120200 0.68 0.98151
Target:  5'- -gGUUGGGG-GAGGUGaccaGGCGCUUCc -3'
miRNA:   3'- uaUAACCCUgCUUCACgc--UUGCGAAG- -5'
6000 5' -49.5 NC_001806.1 + 111235 0.66 0.997127
Target:  5'- ---gUGGGugGcGGcgGCGGACaGCUUUg -3'
miRNA:   3'- uauaACCCugCuUCa-CGCUUG-CGAAG- -5'
6000 5' -49.5 NC_001806.1 + 109575 0.66 0.997127
Target:  5'- cGUAUgGGGACGGgguauacacaaAGUGCGAggaaACGUUg- -3'
miRNA:   3'- -UAUAaCCCUGCU-----------UCACGCU----UGCGAag -5'
6000 5' -49.5 NC_001806.1 + 103438 0.71 0.934193
Target:  5'- ---gUGGGAUGAGGgggcGCGAugGCa-- -3'
miRNA:   3'- uauaACCCUGCUUCa---CGCUugCGaag -5'
6000 5' -49.5 NC_001806.1 + 99624 0.67 0.993596
Target:  5'- ---cUGGGugGAAGgacauggggGCGGugGCg-- -3'
miRNA:   3'- uauaACCCugCUUCa--------CGCUugCGaag -5'
6000 5' -49.5 NC_001806.1 + 97926 0.67 0.99133
Target:  5'- uAUGUUGGGccgcguugccaucGCGuGGUGCGAGCuGCa-- -3'
miRNA:   3'- -UAUAACCC-------------UGCuUCACGCUUG-CGaag -5'
6000 5' -49.5 NC_001806.1 + 95297 0.73 0.883492
Target:  5'- ----gGGGGCGggGggcgcgGCGGACGCg-- -3'
miRNA:   3'- uauaaCCCUGCuuCa-----CGCUUGCGaag -5'
6000 5' -49.5 NC_001806.1 + 90540 0.66 0.995287
Target:  5'- ----gGGaGGCGcuGUGUGAGCGCcUCg -3'
miRNA:   3'- uauaaCC-CUGCuuCACGCUUGCGaAG- -5'
6000 5' -49.5 NC_001806.1 + 89702 0.83 0.380371
Target:  5'- uUAUUaGGACaAAGUGCGAACGCUUCg -3'
miRNA:   3'- uAUAAcCCUGcUUCACGCUUGCGAAG- -5'
6000 5' -49.5 NC_001806.1 + 84438 0.69 0.973808
Target:  5'- ----gGGGACGggGgccgguuUGUGAGCcuGCUUCg -3'
miRNA:   3'- uauaaCCCUGCuuC-------ACGCUUG--CGAAG- -5'
6000 5' -49.5 NC_001806.1 + 81666 0.67 0.990184
Target:  5'- ---gUGGGGCGAAG-GCguccgGAACGCa-- -3'
miRNA:   3'- uauaACCCUGCUUCaCG-----CUUGCGaag -5'
6000 5' -49.5 NC_001806.1 + 76936 0.73 0.852047
Target:  5'- ---gUGGGACGAGGUauGgGGuCGCUUCg -3'
miRNA:   3'- uauaACCCUGCUUCA--CgCUuGCGAAG- -5'
6000 5' -49.5 NC_001806.1 + 63007 0.67 0.994494
Target:  5'- ----aGGGACGGGccccGCGAACGCa-- -3'
miRNA:   3'- uauaaCCCUGCUUca--CGCUUGCGaag -5'
6000 5' -49.5 NC_001806.1 + 61662 0.72 0.917165
Target:  5'- uUGUUGGuGCGAAGguagGCGAugGCggCa -3'
miRNA:   3'- uAUAACCcUGCUUCa---CGCUugCGaaG- -5'
6000 5' -49.5 NC_001806.1 + 55098 0.69 0.974088
Target:  5'- ----gGGGGCGGAacaUGCGGACGCg-- -3'
miRNA:   3'- uauaaCCCUGCUUc--ACGCUUGCGaag -5'
6000 5' -49.5 NC_001806.1 + 49986 0.68 0.983589
Target:  5'- ----cGGGugGguGUGCGGgacGCGcCUUCa -3'
miRNA:   3'- uauaaCCCugCuuCACGCU---UGC-GAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.