miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6000 5' -49.5 NC_001806.1 + 120200 0.68 0.98151
Target:  5'- -gGUUGGGG-GAGGUGaccaGGCGCUUCc -3'
miRNA:   3'- uaUAACCCUgCUUCACgc--UUGCGAAG- -5'
6000 5' -49.5 NC_001806.1 + 137594 0.69 0.979239
Target:  5'- ----gGGGGCGAGGaguUGCGGAacgaGUUUCg -3'
miRNA:   3'- uauaaCCCUGCUUC---ACGCUUg---CGAAG- -5'
6000 5' -49.5 NC_001806.1 + 147623 0.69 0.976768
Target:  5'- ----aGGGACG-AGUGCGAcuggggcacacgGCGCgcgUCc -3'
miRNA:   3'- uauaaCCCUGCuUCACGCU------------UGCGa--AG- -5'
6000 5' -49.5 NC_001806.1 + 55098 0.69 0.974088
Target:  5'- ----gGGGGCGGAacaUGCGGACGCg-- -3'
miRNA:   3'- uauaaCCCUGCUUc--ACGCUUGCGaag -5'
6000 5' -49.5 NC_001806.1 + 84438 0.69 0.973808
Target:  5'- ----gGGGACGggGgccgguuUGUGAGCcuGCUUCg -3'
miRNA:   3'- uauaaCCCUGCuuC-------ACGCUUG--CGAAG- -5'
6000 5' -49.5 NC_001806.1 + 24957 0.69 0.971189
Target:  5'- ---cUGGGACGAAGacgacgGCG-GCGCgUUCg -3'
miRNA:   3'- uauaACCCUGCUUCa-----CGCuUGCG-AAG- -5'
6000 5' -49.5 NC_001806.1 + 128931 0.7 0.964708
Target:  5'- ----gGGGACGAcgAGUGCGAACaGUa-- -3'
miRNA:   3'- uauaaCCCUGCU--UCACGCUUG-CGaag -5'
6000 5' -49.5 NC_001806.1 + 103438 0.71 0.934193
Target:  5'- ---gUGGGAUGAGGgggcGCGAugGCa-- -3'
miRNA:   3'- uauaACCCUGCUUCa---CGCUugCGaag -5'
6000 5' -49.5 NC_001806.1 + 61662 0.72 0.917165
Target:  5'- uUGUUGGuGCGAAGguagGCGAugGCggCa -3'
miRNA:   3'- uAUAACCcUGCUUCa---CGCUugCGaaG- -5'
6000 5' -49.5 NC_001806.1 + 95297 0.73 0.883492
Target:  5'- ----gGGGGCGggGggcgcgGCGGACGCg-- -3'
miRNA:   3'- uauaaCCCUGCuuCa-----CGCUUGCGaag -5'
6000 5' -49.5 NC_001806.1 + 6026 0.73 0.868245
Target:  5'- uUAUUaGGGCGAAGUGCGAGCaCUg- -3'
miRNA:   3'- uAUAAcCCUGCUUCACGCUUGcGAag -5'
6000 5' -49.5 NC_001806.1 + 76936 0.73 0.852047
Target:  5'- ---gUGGGACGAGGUauGgGGuCGCUUCg -3'
miRNA:   3'- uauaACCCUGCUUCA--CgCUuGCGAAG- -5'
6000 5' -49.5 NC_001806.1 + 89702 0.83 0.380371
Target:  5'- uUAUUaGGACaAAGUGCGAACGCUUCg -3'
miRNA:   3'- uAUAAcCCUGcUUCACGCUUGCGAAG- -5'
6000 5' -49.5 NC_001806.1 + 20246 1.09 0.010654
Target:  5'- uAUAUUGGGACGAAGUGCGAACGCUUCg -3'
miRNA:   3'- -UAUAACCCUGCUUCACGCUUGCGAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.