Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6001 | 3' | -58.7 | NC_001806.1 | + | 148107 | 0.72 | 0.456829 |
Target: 5'- uGUCcgaGCCGCGGcCGGCUGGggggCUGCg -3' miRNA: 3'- gCAGag-CGGCGCU-GUCGACCga--GACG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 139117 | 0.69 | 0.61008 |
Target: 5'- cCGgCUCGCCGCG-CGGggGGCUgauguccgucgccCUGCa -3' miRNA: 3'- -GCaGAGCGGCGCuGUCgaCCGA-------------GACG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 133060 | 0.66 | 0.798773 |
Target: 5'- --cCUgCGCUGCGGCAGCuccugggugggguaaUGGCcgccgUCUGCc -3' miRNA: 3'- gcaGA-GCGGCGCUGUCG---------------ACCG-----AGACG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 131809 | 0.66 | 0.776336 |
Target: 5'- gGUCUCcgucaCCGCGACggAGCUgcgggauuucuacGGCUCcGCg -3' miRNA: 3'- gCAGAGc----GGCGCUG--UCGA-------------CCGAGaCG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 119010 | 0.67 | 0.749346 |
Target: 5'- gCGUCUaugacccguaCGCCGUGGCGGCgcUGcGCcUUGCg -3' miRNA: 3'- -GCAGA----------GCGGCGCUGUCG--AC-CGaGACG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 106783 | 0.66 | 0.821147 |
Target: 5'- aCGcCUcCGCCGCGugGGC-GGCUa--- -3' miRNA: 3'- -GCaGA-GCGGCGCugUCGaCCGAgacg -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 103805 | 0.75 | 0.333256 |
Target: 5'- gCGgcgC-CGCCGCGGCGGCgacgGGCUC-GCu -3' miRNA: 3'- -GCa--GaGCGGCGCUGUCGa---CCGAGaCG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 96225 | 0.66 | 0.804029 |
Target: 5'- uCGUCgagagCGCCccCGACGGCUGuaUCgGCc -3' miRNA: 3'- -GCAGa----GCGGc-GCUGUCGACcgAGaCG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 95631 | 0.68 | 0.710796 |
Target: 5'- aCG-UUCGCCGCGGucGCcaacGGCUUUGCg -3' miRNA: 3'- -GCaGAGCGGCGCUguCGa---CCGAGACG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 89237 | 0.68 | 0.670219 |
Target: 5'- aGUUUUGCCucaaacaagGCGGgggucccCGGCUGGCUCcGCg -3' miRNA: 3'- gCAGAGCGG---------CGCU-------GUCGACCGAGaCG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 82703 | 0.67 | 0.748399 |
Target: 5'- aG-CUCGCCGUGcacacacGCGGUguccgGGgUCUGCg -3' miRNA: 3'- gCaGAGCGGCGC-------UGUCGa----CCgAGACG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 69259 | 0.77 | 0.241686 |
Target: 5'- cCGcCggCGCCcagcaGCGGCuGCUGGCUCUGCu -3' miRNA: 3'- -GCaGa-GCGG-----CGCUGuCGACCGAGACG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 60036 | 0.7 | 0.571193 |
Target: 5'- cCGUC-CGCCGCGcccucgaAGCcGGCcCUGCg -3' miRNA: 3'- -GCAGaGCGGCGCug-----UCGaCCGaGACG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 50717 | 0.7 | 0.581119 |
Target: 5'- uCGUCcUGCaGCGGCuGCUGGgCUUUGCc -3' miRNA: 3'- -GCAGaGCGgCGCUGuCGACC-GAGACG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 46420 | 0.67 | 0.749346 |
Target: 5'- gCGUCUucugCGCCGCGGuCGGgcgcCUGGCggccaUGCa -3' miRNA: 3'- -GCAGA----GCGGCGCU-GUC----GACCGag---ACG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 42648 | 0.67 | 0.730235 |
Target: 5'- gCGUC-CGgUGCGGgGGCUGGCgUUGUu -3' miRNA: 3'- -GCAGaGCgGCGCUgUCGACCGaGACG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 42232 | 0.67 | 0.768062 |
Target: 5'- cCGgC-CGCCGCGGCcccgcgGGCguacUGGCUCgUGCa -3' miRNA: 3'- -GCaGaGCGGCGCUG------UCG----ACCGAG-ACG- -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 38376 | 0.67 | 0.719579 |
Target: 5'- uGUCcgauuccaggUCGUCGCGGCGGCUcuccgccGGCUCg-- -3' miRNA: 3'- gCAG----------AGCGGCGCUGUCGA-------CCGAGacg -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 38068 | 0.73 | 0.412865 |
Target: 5'- gCGUC-CGCCGCGGgcaGGCUgGGCUUUGg -3' miRNA: 3'- -GCAGaGCGGCGCUg--UCGA-CCGAGACg -5' |
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6001 | 3' | -58.7 | NC_001806.1 | + | 33717 | 0.67 | 0.758758 |
Target: 5'- uGcCUCuGCCGCuuguGAguGCgcgcgccGGCUCUGCg -3' miRNA: 3'- gCaGAG-CGGCG----CUguCGa------CCGAGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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