miRNA: 3'- -GAGGUCa-----CGA----UCGGUGUG------UUGCCGcu -5'
miRNA: 3'- -GAGGUC--ACGAUCGGUGugU--UG-CCGCU- -5'
miRNA: 3'- -GAGGUCACGAUCGGUGUGUUGCCGCU- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 6005 | 5' | -55.3 | NC_001809.1 | + | 9122 | 0.66 | 0.228445 |
|
Target: 5'- aCUCCAGgaagcgGCUccccAGCCACAUguaccaGAUGGCc- -3' miRNA: 3'- -GAGGUCa-----CGA----UCGGUGUG------UUGCCGcu -5' |
|||||||
| 6005 | 5' | -55.3 | NC_001809.1 | + | 5380 | 0.71 | 0.095154 |
|
Target: 5'- cCUCCAGccUGUUGGUCACugAcuGCuGGCGAa -3' miRNA: 3'- -GAGGUC--ACGAUCGGUGugU--UG-CCGCU- -5' |
|||||||
| 6005 | 5' | -55.3 | NC_001809.1 | + | 919 | 1.08 | 0.000096 |
|
Target: 5'- uCUCCAGUGCUAGCCACACAACGGCGAc -3' miRNA: 3'- -GAGGUCACGAUCGGUGUGUUGCCGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home