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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6008 | 5' | -54.3 | NC_001809.1 | + | 2241 | 0.66 | 0.301908 |
Target: 5'- cCGCUGGUGGcuucuuUGGCUCaaUUGGAa-- -3' miRNA: 3'- aGUGACCACU------ACCGAGgcAACCUgag -5' |
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6008 | 5' | -54.3 | NC_001809.1 | + | 5252 | 0.76 | 0.051469 |
Target: 5'- gCAUUGGcgGAUGaGCUCCGggaGGACUCu -3' miRNA: 3'- aGUGACCa-CUAC-CGAGGCaa-CCUGAG- -5' |
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6008 | 5' | -54.3 | NC_001809.1 | + | 5624 | 1.1 | 9.7e-05 |
Target: 5'- cUCACUGGUGAUGGCUCCGUUGGACUCu -3' miRNA: 3'- -AGUGACCACUACCGAGGCAACCUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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