miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
601 3' -60.5 AC_000017.1 + 4998 0.66 0.340218
Target:  5'- uGCAGCCgguaauaGGUGugauuuacGgGCCCACCGGCUg -3'
miRNA:   3'- gUGUCGGg------CCGC--------UgCGGGUGGUUGAg -5'
601 3' -60.5 AC_000017.1 + 12955 0.66 0.33207
Target:  5'- uGCGGgcuCCCacaGGCGACGCgCgACCGugUCu -3'
miRNA:   3'- gUGUC---GGG---CCGCUGCG-GgUGGUugAG- -5'
601 3' -60.5 AC_000017.1 + 17461 0.66 0.324067
Target:  5'- gGCAGUagcgcgCUGGCGGCGCCgUACUucCUCg -3'
miRNA:   3'- gUGUCG------GGCCGCUGCGG-GUGGuuGAG- -5'
601 3' -60.5 AC_000017.1 + 15665 0.66 0.316209
Target:  5'- -cCAGauUuuGGCG-CGCCCGCCAGCc- -3'
miRNA:   3'- guGUC--GggCCGCuGCGGGUGGUUGag -5'
601 3' -60.5 AC_000017.1 + 12725 0.66 0.316209
Target:  5'- cCACGGCCUcGCGcACauccCCCACCAGC-Cg -3'
miRNA:   3'- -GUGUCGGGcCGC-UGc---GGGUGGUUGaG- -5'
601 3' -60.5 AC_000017.1 + 26529 0.66 0.316209
Target:  5'- gGCAGUgCCGGCGGCGCCUGaggAGCg- -3'
miRNA:   3'- gUGUCG-GGCCGCUGCGGGUgg-UUGag -5'
601 3' -60.5 AC_000017.1 + 8340 0.66 0.308495
Target:  5'- uUugGGCUCGcGCGGCGUggugguccgauCCACCGuaACUCc -3'
miRNA:   3'- -GugUCGGGC-CGCUGCG-----------GGUGGU--UGAG- -5'
601 3' -60.5 AC_000017.1 + 9308 0.66 0.300925
Target:  5'- --gAGCUCGGCGAcaguguCGCgCACCucgcGCUCa -3'
miRNA:   3'- gugUCGGGCCGCU------GCGgGUGGu---UGAG- -5'
601 3' -60.5 AC_000017.1 + 15597 0.67 0.27908
Target:  5'- aACAGCUCGGC---GCCCACCAcCg- -3'
miRNA:   3'- gUGUCGGGCCGcugCGGGUGGUuGag -5'
601 3' -60.5 AC_000017.1 + 16794 0.69 0.209714
Target:  5'- uUAC-GCCCGGUGAgCGCuCCACCcGCa- -3'
miRNA:   3'- -GUGuCGGGCCGCU-GCG-GGUGGuUGag -5'
601 3' -60.5 AC_000017.1 + 10995 0.69 0.209714
Target:  5'- cCGCAGUCCGGCcg-GCCCGa-GACUCg -3'
miRNA:   3'- -GUGUCGGGCCGcugCGGGUggUUGAG- -5'
601 3' -60.5 AC_000017.1 + 14265 0.69 0.198823
Target:  5'- cCGCcGCCacuGGCGccGCGCUCACCAcGCUCu -3'
miRNA:   3'- -GUGuCGGg--CCGC--UGCGGGUGGU-UGAG- -5'
601 3' -60.5 AC_000017.1 + 26146 0.69 0.193564
Target:  5'- -cCAGUCCGGCGAggaGCUCAacCCAAUUCc -3'
miRNA:   3'- guGUCGGGCCGCUg--CGGGU--GGUUGAG- -5'
601 3' -60.5 AC_000017.1 + 13900 0.69 0.18792
Target:  5'- gCACAgggauguGCCCGGCccGCGCCCGCCcACcCg -3'
miRNA:   3'- -GUGU-------CGGGCCGc-UGCGGGUGGuUGaG- -5'
601 3' -60.5 AC_000017.1 + 17757 0.7 0.183411
Target:  5'- cCACGGCCUgacgGGCGgcaugcgucguGCGCaCCACCGGCg- -3'
miRNA:   3'- -GUGUCGGG----CCGC-----------UGCG-GGUGGUUGag -5'
601 3' -60.5 AC_000017.1 + 9805 0.71 0.147379
Target:  5'- cCGCcGCCCGcUGcCGCCCGCCAcgguGCUCa -3'
miRNA:   3'- -GUGuCGGGCcGCuGCGGGUGGU----UGAG- -5'
601 3' -60.5 AC_000017.1 + 17031 0.73 0.108348
Target:  5'- gCGCgAGUCUGGUgacuuGGCGCCCACCGugcaGCUCa -3'
miRNA:   3'- -GUG-UCGGGCCG-----CUGCGGGUGGU----UGAG- -5'
601 3' -60.5 AC_000017.1 + 28001 0.74 0.088792
Target:  5'- gAgGGCCCGGCGcACGgCguCCGGCUCa -3'
miRNA:   3'- gUgUCGGGCCGC-UGCgGguGGUUGAG- -5'
601 3' -60.5 AC_000017.1 + 24053 0.75 0.070556
Target:  5'- aCGCGGUgCGGCgcGACGUCCACCAACc- -3'
miRNA:   3'- -GUGUCGgGCCG--CUGCGGGUGGUUGag -5'
601 3' -60.5 AC_000017.1 + 1509 1.08 0.000183
Target:  5'- cCACAGCCCGGCGACGCCCACCAACUCu -3'
miRNA:   3'- -GUGUCGGGCCGCUGCGGGUGGUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.