miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6013 5' -47.9 NC_001809.1 + 2429 0.66 0.614605
Target:  5'- -uUGGCCAugacucucggGGUGGGAgcggaugucGGCUGUgcAGUg -3'
miRNA:   3'- cuACCGGU----------UUACCUU---------UCGACGauUCG- -5'
6013 5' -47.9 NC_001809.1 + 7771 0.66 0.614605
Target:  5'- --aGGCCA----GAGAGCUGCUcAGg -3'
miRNA:   3'- cuaCCGGUuuacCUUUCGACGAuUCg -5'
6013 5' -47.9 NC_001809.1 + 1738 0.67 0.561555
Target:  5'- -uUGGagauCAGAcUGGAGuGCUGCUGAGg -3'
miRNA:   3'- cuACCg---GUUU-ACCUUuCGACGAUUCg -5'
6013 5' -47.9 NC_001809.1 + 9071 0.67 0.561555
Target:  5'- --gGGCCAucUGGuacauguGGCUGggGAGCc -3'
miRNA:   3'- cuaCCGGUuuACCuu-----UCGACgaUUCG- -5'
6013 5' -47.9 NC_001809.1 + 10040 0.67 0.548465
Target:  5'- --cGGCC-GGUGGGcacccagucgacGGGCacUGCUGGGCu -3'
miRNA:   3'- cuaCCGGuUUACCU------------UUCG--ACGAUUCG- -5'
6013 5' -47.9 NC_001809.1 + 8909 0.67 0.535472
Target:  5'- aGAUGGgCAAGUGcGAGagaGGCUGUgguGGUc -3'
miRNA:   3'- -CUACCgGUUUAC-CUU---UCGACGau-UCG- -5'
6013 5' -47.9 NC_001809.1 + 2646 0.68 0.484711
Target:  5'- aGAUGGCCAuGUGGAGAa--GCUcGGUc -3'
miRNA:   3'- -CUACCGGUuUACCUUUcgaCGAuUCG- -5'
6013 5' -47.9 NC_001809.1 + 3500 0.69 0.413255
Target:  5'- uGGUGGUUGcggacAAUGGuGAGCUGCUcAGUg -3'
miRNA:   3'- -CUACCGGU-----UUACCuUUCGACGAuUCG- -5'
6013 5' -47.9 NC_001809.1 + 9930 0.71 0.33863
Target:  5'- --cGGgCAGAUGu--GGCUGCUGAGUu -3'
miRNA:   3'- cuaCCgGUUUACcuuUCGACGAUUCG- -5'
6013 5' -47.9 NC_001809.1 + 5526 0.71 0.319186
Target:  5'- gGGUGuaCAAGUGGccucuAGCUGCUAuGCu -3'
miRNA:   3'- -CUACcgGUUUACCuu---UCGACGAUuCG- -5'
6013 5' -47.9 NC_001809.1 + 7279 1.13 0.000279
Target:  5'- cGAUGGCCAAAUGGAAAGCUGCUAAGCc -3'
miRNA:   3'- -CUACCGGUUUACCUUUCGACGAUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.