miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6014 5' -50.9 NC_001809.1 + 1250 0.66 0.490752
Target:  5'- ---gGACCAgAGugAuCGAGGCugGGg -3'
miRNA:   3'- aguaCUGGUgUCugU-GCUCUGugUCg -5'
6014 5' -50.9 NC_001809.1 + 2046 0.66 0.490752
Target:  5'- gCAUGGCCACAuuGACAUcagGAGAuccaugugcCACuGCu -3'
miRNA:   3'- aGUACUGGUGU--CUGUG---CUCU---------GUGuCG- -5'
6014 5' -50.9 NC_001809.1 + 7145 0.66 0.490752
Target:  5'- cUCAUGGCCugcgcacCAGACGC----CACGGCa -3'
miRNA:   3'- -AGUACUGGu------GUCUGUGcucuGUGUCG- -5'
6014 5' -50.9 NC_001809.1 + 7455 0.67 0.398972
Target:  5'- gUCAUGaACCGCAcaguggcuuccauGACA-GAGGCuGCGGCu -3'
miRNA:   3'- -AGUAC-UGGUGU-------------CUGUgCUCUG-UGUCG- -5'
6014 5' -50.9 NC_001809.1 + 7804 0.67 0.389466
Target:  5'- aCAUGGgacUgGCGGucuCGCGuGGCACGGCa -3'
miRNA:   3'- aGUACU---GgUGUCu--GUGCuCUGUGUCG- -5'
6014 5' -50.9 NC_001809.1 + 8676 0.68 0.379079
Target:  5'- gCAUGGCCAUgacuGACACGAcagccuuuGgGCAGCa -3'
miRNA:   3'- aGUACUGGUGu---CUGUGCUc-------UgUGUCG- -5'
6014 5' -50.9 NC_001809.1 + 6370 0.69 0.320759
Target:  5'- cUCA-GGCCAguGugGaGAGACGCAcGCa -3'
miRNA:   3'- -AGUaCUGGUguCugUgCUCUGUGU-CG- -5'
6014 5' -50.9 NC_001809.1 + 3678 0.71 0.218134
Target:  5'- aUCcUGACCAuucCAGugACGAG-CAgAGCa -3'
miRNA:   3'- -AGuACUGGU---GUCugUGCUCuGUgUCG- -5'
6014 5' -50.9 NC_001809.1 + 8561 0.72 0.211528
Target:  5'- aCAUGGCaguaCugGGGCACGucccGCACAGCa -3'
miRNA:   3'- aGUACUG----GugUCUGUGCuc--UGUGUCG- -5'
6014 5' -50.9 NC_001809.1 + 5351 0.73 0.169971
Target:  5'- -aGUGACCaACAGGCugGAGGgGCAa- -3'
miRNA:   3'- agUACUGG-UGUCUGugCUCUgUGUcg -5'
6014 5' -50.9 NC_001809.1 + 7260 0.75 0.131544
Target:  5'- --uUGGCCAUcgugguaucuGGACugGAGGCugAGCu -3'
miRNA:   3'- aguACUGGUG----------UCUGugCUCUGugUCG- -5'
6014 5' -50.9 NC_001809.1 + 574 0.81 0.04684
Target:  5'- aUCcUGGCCACAGACAUGGGGuCAUGGUg -3'
miRNA:   3'- -AGuACUGGUGUCUGUGCUCU-GUGUCG- -5'
6014 5' -50.9 NC_001809.1 + 7472 1.14 0.00013
Target:  5'- uUCAUGACCACAGACACGAGACACAGCa -3'
miRNA:   3'- -AGUACUGGUGUCUGUGCUCUGUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.