miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
603 3' -58.8 AC_000017.1 + 17049 0.65 0.426355
Target:  5'- gGCGCCCaccgugcagcucauGGUGC-CCaaGCgccaACGACUGGa -3'
miRNA:   3'- -UGCGGG--------------UCGCGaGGa-CGa---UGCUGACC- -5'
603 3' -58.8 AC_000017.1 + 24014 0.66 0.423474
Target:  5'- cGCGUCC-GCGCUCgggggugguuucgcgCUGCUccucuuccCGACUGGc -3'
miRNA:   3'- -UGCGGGuCGCGAG---------------GACGAu-------GCUGACC- -5'
603 3' -58.8 AC_000017.1 + 16153 0.66 0.410184
Target:  5'- -aGCCCGGCGCUa-UGCUaaaaugaagagACGGC-GGa -3'
miRNA:   3'- ugCGGGUCGCGAggACGA-----------UGCUGaCC- -5'
603 3' -58.8 AC_000017.1 + 26098 0.66 0.410184
Target:  5'- cCGCCaAGaGUUUCUGCUACGAaaGGg -3'
miRNA:   3'- uGCGGgUCgCGAGGACGAUGCUgaCC- -5'
603 3' -58.8 AC_000017.1 + 8924 0.66 0.400851
Target:  5'- cGCGUCCGGCucGCUCCacgGUgGCGGCgaGGu -3'
miRNA:   3'- -UGCGGGUCG--CGAGGa--CGaUGCUGa-CC- -5'
603 3' -58.8 AC_000017.1 + 34134 0.66 0.400851
Target:  5'- uACGUCCGGCGUUCCauuugGC-AUGACa-- -3'
miRNA:   3'- -UGCGGGUCGCGAGGa----CGaUGCUGacc -5'
603 3' -58.8 AC_000017.1 + 18398 0.67 0.37368
Target:  5'- cACGgCCGGUggagGCUCCU-CUACGGgaGGg -3'
miRNA:   3'- -UGCgGGUCG----CGAGGAcGAUGCUgaCC- -5'
603 3' -58.8 AC_000017.1 + 16053 0.67 0.356274
Target:  5'- cGCGCCCcaggGGCGCgguagugCCcGCgcacGCGcACUGGg -3'
miRNA:   3'- -UGCGGG----UCGCGa------GGaCGa---UGC-UGACC- -5'
603 3' -58.8 AC_000017.1 + 26917 0.67 0.339445
Target:  5'- gGCGCCagacgCAGCGCUCCUccucCUGCuGCUGc -3'
miRNA:   3'- -UGCGG-----GUCGCGAGGAc---GAUGcUGACc -5'
603 3' -58.8 AC_000017.1 + 12997 0.67 0.331249
Target:  5'- gACGCCCAacuCGCgCCUGUUGCuGCUGc -3'
miRNA:   3'- -UGCGGGUc--GCGaGGACGAUGcUGACc -5'
603 3' -58.8 AC_000017.1 + 10113 0.68 0.288064
Target:  5'- cGCGCUCGGCuaauauggCCUGCUGCaccugcgugaggguaGACUGGa -3'
miRNA:   3'- -UGCGGGUCGcga-----GGACGAUG---------------CUGACC- -5'
603 3' -58.8 AC_000017.1 + 17219 0.69 0.270956
Target:  5'- cACGCCCAGUcccgguGCcaCCUGCU-UGAUUGGu -3'
miRNA:   3'- -UGCGGGUCG------CGa-GGACGAuGCUGACC- -5'
603 3' -58.8 AC_000017.1 + 19213 0.69 0.250733
Target:  5'- -aGCCCccaaaGGCGCUCCcaauucCUGCGAgUGGg -3'
miRNA:   3'- ugCGGG-----UCGCGAGGac----GAUGCUgACC- -5'
603 3' -58.8 AC_000017.1 + 18859 0.7 0.225724
Target:  5'- gGCGaCUCAGCaGCUCCUcugGCgGCGACaUGGa -3'
miRNA:   3'- -UGC-GGGUCG-CGAGGA---CGaUGCUG-ACC- -5'
603 3' -58.8 AC_000017.1 + 2232 0.72 0.167683
Target:  5'- cCGCCUGGCuucCUCCUGCUGCuGCUGu -3'
miRNA:   3'- uGCGGGUCGc--GAGGACGAUGcUGACc -5'
603 3' -58.8 AC_000017.1 + 4348 1.1 0.000212
Target:  5'- cACGCCCAGCGCUCCUGCUACGACUGGa -3'
miRNA:   3'- -UGCGGGUCGCGAGGACGAUGCUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.