miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
603 5' -56.4 AC_000017.1 + 10060 0.66 0.516799
Target:  5'- cCGCCGCgCCGCAGCGauagaUGcAAGagaUGCa -3'
miRNA:   3'- -GUGGUGgGGCGUCGU-----AC-UUCgagACG- -5'
603 5' -56.4 AC_000017.1 + 23993 0.66 0.515712
Target:  5'- cCGCCuCCCCGCgcgcccccaaaaaAGCGgcUGAGGCg--GCg -3'
miRNA:   3'- -GUGGuGGGGCG-------------UCGU--ACUUCGagaCG- -5'
603 5' -56.4 AC_000017.1 + 6509 0.66 0.488836
Target:  5'- gGCCGCCCUugcgcgagcagaaugGCGGUagGggGUcuagCUGCg -3'
miRNA:   3'- gUGGUGGGG---------------CGUCGuaCuuCGa---GACG- -5'
603 5' -56.4 AC_000017.1 + 9129 0.67 0.443225
Target:  5'- -uUCGCCCgGCA-CGUGGAGCUCa-- -3'
miRNA:   3'- guGGUGGGgCGUcGUACUUCGAGacg -5'
603 5' -56.4 AC_000017.1 + 8378 0.68 0.403918
Target:  5'- ---aGCuCCCGCGGCGUcaggucaggcgGGAGCUcCUGCa -3'
miRNA:   3'- guggUG-GGGCGUCGUA-----------CUUCGA-GACG- -5'
603 5' -56.4 AC_000017.1 + 5477 0.68 0.375924
Target:  5'- aGCCcCUCCGCGGCAUGGcccuuggcgcgcAGCU-UGCc -3'
miRNA:   3'- gUGGuGGGGCGUCGUACU------------UCGAgACG- -5'
603 5' -56.4 AC_000017.1 + 12825 0.68 0.375924
Target:  5'- -uCCuguCCCCGCGGCAcguUGGcgGGCUgUGUa -3'
miRNA:   3'- guGGu--GGGGCGUCGU---ACU--UCGAgACG- -5'
603 5' -56.4 AC_000017.1 + 15233 0.68 0.366888
Target:  5'- uGCCGcCCCCGCuGCG-GAGGCU--GCa -3'
miRNA:   3'- gUGGU-GGGGCGuCGUaCUUCGAgaCG- -5'
603 5' -56.4 AC_000017.1 + 16225 0.69 0.332262
Target:  5'- uGCCGCCCaacgCGCGGCGgc-GGCcCUGCu -3'
miRNA:   3'- gUGGUGGG----GCGUCGUacuUCGaGACG- -5'
603 5' -56.4 AC_000017.1 + 25208 0.7 0.284939
Target:  5'- gCGCCAggCCUGCAaaauuuccaaCGUGGAGCUCUGCa -3'
miRNA:   3'- -GUGGUg-GGGCGUc---------GUACUUCGAGACG- -5'
603 5' -56.4 AC_000017.1 + 18315 0.7 0.284939
Target:  5'- cCACCACCCCGCuaauGCcaGAGGCcagGCc -3'
miRNA:   3'- -GUGGUGGGGCGu---CGuaCUUCGagaCG- -5'
603 5' -56.4 AC_000017.1 + 4311 1.12 0.000211
Target:  5'- aCACCACCCCGCAGCAUGAAGCUCUGCa -3'
miRNA:   3'- -GUGGUGGGGCGUCGUACUUCGAGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.