miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6033 3' -46.9 NC_001813.1 + 27696 0.66 0.963275
Target:  5'- uUCACAGUUAUcgucaucuaaaucacAGUUCAuuGCUCCcAACu -3'
miRNA:   3'- -AGUGUCGAUA---------------UCAAGU--UGGGGuUUGc -5'
6033 3' -46.9 NC_001813.1 + 27891 0.66 0.947805
Target:  5'- -uGguGCUGUGGggCAAUCUCAggUGg -3'
miRNA:   3'- agUguCGAUAUCaaGUUGGGGUuuGC- -5'
6033 3' -46.9 NC_001813.1 + 13735 0.67 0.94254
Target:  5'- cUCACaAGUUAgGGcccgCcGCCCCAGACGa -3'
miRNA:   3'- -AGUG-UCGAUaUCaa--GuUGGGGUUUGC- -5'
6033 3' -46.9 NC_001813.1 + 12702 0.67 0.931009
Target:  5'- -gACAGCUAUAuuggUCAAUUCCAGAUu -3'
miRNA:   3'- agUGUCGAUAUca--AGUUGGGGUUUGc -5'
6033 3' -46.9 NC_001813.1 + 2732 0.68 0.888349
Target:  5'- gCACAGCaGUAGUUUGACCaaUAAACa -3'
miRNA:   3'- aGUGUCGaUAUCAAGUUGGg-GUUUGc -5'
6033 3' -46.9 NC_001813.1 + 21742 0.71 0.770993
Target:  5'- gCGCGGUUAUcaauuGGUUCAACUCUggGCc -3'
miRNA:   3'- aGUGUCGAUA-----UCAAGUUGGGGuuUGc -5'
6033 3' -46.9 NC_001813.1 + 876 1.1 0.003342
Target:  5'- gUCACAGCUAUAGUUCAACCCCAAACGc -3'
miRNA:   3'- -AGUGUCGAUAUCAAGUUGGGGUUUGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.