miRNA: 3'- guAUGAAGUGUuugauACACUUCAUu -5'
miRNA: 3'- -GUAUGAAGUGUUUGAUACACUUCAUU- -5'
Results 1 - 2 of 2 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6037 | 5' | -40.7 | NC_001813.1 | + | 8341 | 0.72 | 0.971601 |
|
Target: 5'- -uUACUUCACAuaguuUGUGAAGUAu -3' miRNA: 3'- guAUGAAGUGUuugauACACUUCAUu -5' |
|||||||
| 6037 | 5' | -40.7 | NC_001813.1 | + | 8399 | 1.08 | 0.020512 |
|
Target: 5'- cCAUACUUCACAAACUAUGUGAAGUAAg -3' miRNA: 3'- -GUAUGAAGUGUUUGAUACACUUCAUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home