miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6050 5' -53.1 NC_001815.1 + 1116 0.66 0.310383
Target:  5'- cGGAG-GAGcCGAGGGCUguUGGAGgGGCg -3'
miRNA:   3'- -CCUCuCUU-GUUCCUGG--GCUUCaCCGa -5'
6050 5' -53.1 NC_001815.1 + 2225 0.68 0.217039
Target:  5'- --cGGGGGCAAGGGCCUGggGcaggacGGUg -3'
miRNA:   3'- ccuCUCUUGUUCCUGGGCuuCa-----CCGa -5'
6050 5' -53.1 NC_001815.1 + 2490 0.69 0.191725
Target:  5'- cGGGGAGGAguuauuccauCGGGGAgCCGggG-GGUa -3'
miRNA:   3'- -CCUCUCUU----------GUUCCUgGGCuuCaCCGa -5'
6050 5' -53.1 NC_001815.1 + 4333 0.69 0.174475
Target:  5'- uGAGGaAACAAGGGCCCuGGAGUuGCa -3'
miRNA:   3'- cCUCUcUUGUUCCUGGG-CUUCAcCGa -5'
6050 5' -53.1 NC_001815.1 + 7026 0.7 0.169039
Target:  5'- cGGAGAGGAUGuacGGGAUggucgCCGGAG-GGCg -3'
miRNA:   3'- -CCUCUCUUGU---UCCUG-----GGCUUCaCCGa -5'
6050 5' -53.1 NC_001815.1 + 2349 0.75 0.069753
Target:  5'- gGGAGGGuAACAGGGGCCCuccgGAAG-GGUa -3'
miRNA:   3'- -CCUCUC-UUGUUCCUGGG----CUUCaCCGa -5'
6050 5' -53.1 NC_001815.1 + 707 1.11 0.000084
Target:  5'- cGGAGAGAACAAGGACCCGAAGUGGCUg -3'
miRNA:   3'- -CCUCUCUUGUUCCUGGGCUUCACCGA- -5'
6050 5' -53.1 NC_001815.1 + 8842 1.11 0.000084
Target:  5'- cGGAGAGAACAAGGACCCGAAGUGGCUg -3'
miRNA:   3'- -CCUCUCUUGUUCCUGGGCUUCACCGA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.