miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6052 3' -56.2 NC_001815.1 + 1631 1.09 0.000052
Target:  5'- gGCCUCCCCGAAGGAACCCCCAAAGAGc -3'
miRNA:   3'- -CGGAGGGGCUUCCUUGGGGGUUUCUC- -5'
6052 3' -56.2 NC_001815.1 + 783 0.72 0.071207
Target:  5'- aGCCcaaUCCCC-AAGG--CCCCCAGGGGGu -3'
miRNA:   3'- -CGG---AGGGGcUUCCuuGGGGGUUUCUC- -5'
6052 3' -56.2 NC_001815.1 + 716 0.71 0.078555
Target:  5'- uGUCUCuCCCGGAGaGAACaaggaCCCGAAGuGg -3'
miRNA:   3'- -CGGAG-GGGCUUC-CUUGg----GGGUUUCuC- -5'
6052 3' -56.2 NC_001815.1 + 8851 0.71 0.078555
Target:  5'- uGUCUCuCCCGGAGaGAACaaggaCCCGAAGuGg -3'
miRNA:   3'- -CGGAG-GGGCUUC-CUUGg----GGGUUUCuC- -5'
6052 3' -56.2 NC_001815.1 + 2734 0.69 0.115819
Target:  5'- gGCCUCCCCGucccccGGAcCUCCCGAu--- -3'
miRNA:   3'- -CGGAGGGGCuu----CCUuGGGGGUUucuc -5'
6052 3' -56.2 NC_001815.1 + 632 0.68 0.140142
Target:  5'- cGCgUCCCUGGcAGGAugcugGCCCCgggccaguggugCAGGGAGg -3'
miRNA:   3'- -CGgAGGGGCU-UCCU-----UGGGG------------GUUUCUC- -5'
6052 3' -56.2 NC_001815.1 + 8767 0.68 0.140142
Target:  5'- cGCgUCCCUGGcAGGAugcugGCCCCgggccaguggugCAGGGAGg -3'
miRNA:   3'- -CGgAGGGGCU-UCCU-----UGGGG------------GUUUCUC- -5'
6052 3' -56.2 NC_001815.1 + 2030 0.67 0.163389
Target:  5'- -aCUCCCUGggGGGGgagauguaaucucCCCCCAAc--- -3'
miRNA:   3'- cgGAGGGGCuuCCUU-------------GGGGGUUucuc -5'
6052 3' -56.2 NC_001815.1 + 651 0.66 0.197136
Target:  5'- gGCCUCUCCgGGAGGggUaCCCAGc--- -3'
miRNA:   3'- -CGGAGGGG-CUUCCuuGgGGGUUucuc -5'
6052 3' -56.2 NC_001815.1 + 2454 0.66 0.208829
Target:  5'- cGgCUCCCCGAuGGAAuaacuccUCCCCGAu--- -3'
miRNA:   3'- -CgGAGGGGCUuCCUU-------GGGGGUUucuc -5'
6052 3' -56.2 NC_001815.1 + 8786 0.66 0.197136
Target:  5'- gGCCUCUCCgGGAGGggUaCCCAGc--- -3'
miRNA:   3'- -CGGAGGGG-CUUCCuuGgGGGUUucuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.