miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6053 5' -53.8 NC_001815.1 + 1843 1.08 0.000101
Target:  5'- cCGCUGCGGGAAAACAGGGCAUUGGAGc -3'
miRNA:   3'- -GCGACGCCCUUUUGUCCCGUAACCUC- -5'
6053 5' -53.8 NC_001815.1 + 1080 0.73 0.06967
Target:  5'- aGCUGguuCGGGuaGAGACGGGGCA--GGAGg -3'
miRNA:   3'- gCGAC---GCCC--UUUUGUCCCGUaaCCUC- -5'
6053 5' -53.8 NC_001815.1 + 4350 0.72 0.085215
Target:  5'- uGCUGUGGGGuggccccugaggAAACaAGGGCccUGGAGu -3'
miRNA:   3'- gCGACGCCCU------------UUUG-UCCCGuaACCUC- -5'
6053 5' -53.8 NC_001815.1 + 1859 0.67 0.224447
Target:  5'- cCGCaGCGG--AAGCAGGGCugcgUGGGc -3'
miRNA:   3'- -GCGaCGCCcuUUUGUCCCGua--ACCUc -5'
6053 5' -53.8 NC_001815.1 + 6854 0.67 0.231428
Target:  5'- gGUUGCuGGGGuuugaAGGGUAUUGuGAGa -3'
miRNA:   3'- gCGACG-CCCUuuug-UCCCGUAAC-CUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.