Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6056 | 3' | -53 | NC_001815.1 | + | 6966 | 0.67 | 0.239897 |
Target: 5'- uCCUUCu-GCUCUuccGCCAGCcccUCCGG-Cg -3' miRNA: 3'- cGGAAGuuUGAGA---UGGUCG---AGGCCcG- -5' |
|||||||
6056 | 3' | -53 | NC_001815.1 | + | 4702 | 1 | 0.000674 |
Target: 5'- uGCCUUacAACUCUACCAGCUCCGGGCu -3' miRNA: 3'- -CGGAAguUUGAGAUGGUCGAGGCCCG- -5' |
|||||||
6056 | 3' | -53 | NC_001815.1 | + | 1516 | 0.71 | 0.133455 |
Target: 5'- gGCCUUUucAGCUCUGCCAGggaacacccgcgaccCaUCCuGGGCa -3' miRNA: 3'- -CGGAAGu-UUGAGAUGGUC---------------G-AGG-CCCG- -5' |
|||||||
6056 | 3' | -53 | NC_001815.1 | + | 835 | 0.69 | 0.187329 |
Target: 5'- uCCUcCAAGCcgcCUACCGGCUacaacCUGGGCc -3' miRNA: 3'- cGGAaGUUUGa--GAUGGUCGA-----GGCCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home