miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
606 5' -58.3 AC_000017.1 + 24707 0.66 0.370266
Target:  5'- --cUGCuuGUCCGCuCGGCUGCGGUu- -3'
miRNA:   3'- uaaAUGccCGGGUG-GCCGACGCCAuu -5'
606 5' -58.3 AC_000017.1 + 8603 0.66 0.370265
Target:  5'- ---gGCGGGCCC-CCGGa---GGUAGg -3'
miRNA:   3'- uaaaUGCCCGGGuGGCCgacgCCAUU- -5'
606 5' -58.3 AC_000017.1 + 23315 0.68 0.280448
Target:  5'- ---cACGaGCCCACgGGCUGCGcGUu- -3'
miRNA:   3'- uaaaUGCcCGGGUGgCCGACGC-CAuu -5'
606 5' -58.3 AC_000017.1 + 8532 0.7 0.208825
Target:  5'- --cUACGGuaCCGCgCGGCggGCGGUGGg -3'
miRNA:   3'- uaaAUGCCcgGGUG-GCCGa-CGCCAUU- -5'
606 5' -58.3 AC_000017.1 + 5658 0.7 0.208825
Target:  5'- --cUGCGGGgCCugCGGC-GCGGa-- -3'
miRNA:   3'- uaaAUGCCCgGGugGCCGaCGCCauu -5'
606 5' -58.3 AC_000017.1 + 10941 0.73 0.125638
Target:  5'- ----uCGGGCCgGCCGGaCUGCGGcGAa -3'
miRNA:   3'- uaaauGCCCGGgUGGCC-GACGCCaUU- -5'
606 5' -58.3 AC_000017.1 + 4623 0.74 0.111874
Target:  5'- ---aAUGGGCCCACgGGCgGCGGc-- -3'
miRNA:   3'- uaaaUGCCCGGGUGgCCGaCGCCauu -5'
606 5' -58.3 AC_000017.1 + 4979 1.04 0.000483
Target:  5'- gAUUUACGGGCCCACCGGCUGCGGUAAg -3'
miRNA:   3'- -UAAAUGCCCGGGUGGCCGACGCCAUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.