miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6064 5' -52.2 NC_001819.1 + 5361 0.66 0.342149
Target:  5'- -cCCGCAAcacgccgGGCCCCCauGGUCUc -3'
miRNA:   3'- ccGGUGUUuuua---CCGGGGGcuUCAGG- -5'
6064 5' -52.2 NC_001819.1 + 8048 0.66 0.323194
Target:  5'- gGGCCAUAucugGGGAccaucuguucuUGGCCCCgggcCGggG-CCg -3'
miRNA:   3'- -CCGGUGU----UUUU-----------ACCGGGG----GCuuCaGG- -5'
6064 5' -52.2 NC_001819.1 + 1148 0.67 0.305034
Target:  5'- cGUCAgAAGAggGUGGCCCU--GGGUCCc -3'
miRNA:   3'- cCGGUgUUUU--UACCGGGGgcUUCAGG- -5'
6064 5' -52.2 NC_001819.1 + 3368 0.69 0.193357
Target:  5'- uGGCCGa------GGCCCgauauCCGAGGUCCc -3'
miRNA:   3'- -CCGGUguuuuuaCCGGG-----GGCUUCAGG- -5'
6064 5' -52.2 NC_001819.1 + 8008 0.7 0.175836
Target:  5'- gGGCCAaGAAcaGAUGGUCCCCaGAuauGGcCCa -3'
miRNA:   3'- -CCGGUgUUU--UUACCGGGGG-CU---UCaGG- -5'
6064 5' -52.2 NC_001819.1 + 6237 0.71 0.149281
Target:  5'- gGGUCACAuc----GCCCCCGGgaagccaAGUCCu -3'
miRNA:   3'- -CCGGUGUuuuuacCGGGGGCU-------UCAGG- -5'
6064 5' -52.2 NC_001819.1 + 3797 0.74 0.085432
Target:  5'- uGGCCGCu-GGGUGGCCCCCuu-G-CCu -3'
miRNA:   3'- -CCGGUGuuUUUACCGGGGGcuuCaGG- -5'
6064 5' -52.2 NC_001819.1 + 1162 0.75 0.074665
Target:  5'- uGGCCccuACAGAAggGGCCCCUGAcucuUCCc -3'
miRNA:   3'- -CCGG---UGUUUUuaCCGGGGGCUuc--AGG- -5'
6064 5' -52.2 NC_001819.1 + 380 0.77 0.053153
Target:  5'- gGGCCAUuuuuGUGGCCCggCCaGAGUCCa -3'
miRNA:   3'- -CCGGUGuuuuUACCGGG--GGcUUCAGG- -5'
6064 5' -52.2 NC_001819.1 + 2218 0.86 0.010798
Target:  5'- aGGCCugGGGucgcGGUCCCCGggGUCCu -3'
miRNA:   3'- -CCGGugUUUuua-CCGGGGGCuuCAGG- -5'
6064 5' -52.2 NC_001819.1 + 404 1.14 0.000064
Target:  5'- gGGCCACAAAAAUGGCCCCCGAAGUCCc -3'
miRNA:   3'- -CCGGUGUUUUUACCGGGGGCUUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.