miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
608 5' -58.1 AC_000017.1 + 5969 0.66 0.476222
Target:  5'- -aCCCUggagcgaguggACCCCCUagUGgacaacgaccgcUACCCCuCCCa -3'
miRNA:   3'- cgGGGG-----------UGGGGGAaaAU------------AUGGGG-GGG- -5'
608 5' -58.1 AC_000017.1 + 24118 0.66 0.476222
Target:  5'- aGCCUaaCCGCCCCCUcugaGUucgccaccACCgCCUCCa -3'
miRNA:   3'- -CGGG--GGUGGGGGAaaa-UA--------UGG-GGGGG- -5'
608 5' -58.1 AC_000017.1 + 6756 0.66 0.467089
Target:  5'- cGCUcaCCCACCCCaugccauggGgUCCCCCa -3'
miRNA:   3'- -CGG--GGGUGGGGgaaaaua--UgGGGGGG- -5'
608 5' -58.1 AC_000017.1 + 123 0.67 0.398472
Target:  5'- cGUUCCCACgCCCCgcgccacGUcacaaacuccACCCCCUCa -3'
miRNA:   3'- -CGGGGGUG-GGGGaaaa---UA----------UGGGGGGG- -5'
608 5' -58.1 AC_000017.1 + 35879 0.67 0.398472
Target:  5'- cGUUCCCACgCCCCgcgccacGUcacaaacuccACCCCCUCa -3'
miRNA:   3'- -CGGGGGUG-GGGGaaaa---UA----------UGGGGGGG- -5'
608 5' -58.1 AC_000017.1 + 27449 0.67 0.389337
Target:  5'- cGCUCCCACCa-CUgugGUACUUCCCa -3'
miRNA:   3'- -CGGGGGUGGggGAaaaUAUGGGGGGg -5'
608 5' -58.1 AC_000017.1 + 19353 0.67 0.371482
Target:  5'- uGCCUCCuCCUCCUc---UGCCUCCUCc -3'
miRNA:   3'- -CGGGGGuGGGGGAaaauAUGGGGGGG- -5'
608 5' -58.1 AC_000017.1 + 24487 0.68 0.362767
Target:  5'- cGCCaCCUguuCUCaCCgcgUGUACCCCCCa -3'
miRNA:   3'- -CGG-GGGu--GGG-GGaaaAUAUGGGGGGg -5'
608 5' -58.1 AC_000017.1 + 24378 0.68 0.362767
Target:  5'- cCCCCCGCCCgacuugcuCCUUguuUGCCUCUgCg -3'
miRNA:   3'- cGGGGGUGGG--------GGAAaauAUGGGGGgG- -5'
608 5' -58.1 AC_000017.1 + 4912 0.68 0.357606
Target:  5'- uCCCCUACCCCggaaaccguuuucUUUAUugCCCCgCa -3'
miRNA:   3'- cGGGGGUGGGGga-----------AAAUAugGGGGgG- -5'
608 5' -58.1 AC_000017.1 + 18326 0.68 0.354194
Target:  5'- aUCCCCGCCCUCccgUAgaggaGCCUCCaCCg -3'
miRNA:   3'- cGGGGGUGGGGGaaaAUa----UGGGGG-GG- -5'
608 5' -58.1 AC_000017.1 + 30127 0.68 0.329344
Target:  5'- uGCUCCCagACCUCCaa----GCCUCCCCa -3'
miRNA:   3'- -CGGGGG--UGGGGGaaaauaUGGGGGGG- -5'
608 5' -58.1 AC_000017.1 + 14229 0.69 0.321351
Target:  5'- gGCgCUgGguuCCCCCUUcgAUGCUCCCCUg -3'
miRNA:   3'- -CGgGGgU---GGGGGAAaaUAUGGGGGGG- -5'
608 5' -58.1 AC_000017.1 + 23998 0.7 0.269479
Target:  5'- cGCCgCCGCCUCCccgc--GCgCCCCCa -3'
miRNA:   3'- -CGGgGGUGGGGGaaaauaUGgGGGGG- -5'
608 5' -58.1 AC_000017.1 + 31151 0.7 0.262645
Target:  5'- uUCCUUACCCCUcccUUUGU-CUCCCCCa -3'
miRNA:   3'- cGGGGGUGGGGGa--AAAUAuGGGGGGG- -5'
608 5' -58.1 AC_000017.1 + 17451 0.7 0.242354
Target:  5'- cGCgCCUACCCCCggcUAucguggcuacaccUACCgCCCCa -3'
miRNA:   3'- -CGgGGGUGGGGGaaaAU-------------AUGGgGGGG- -5'
608 5' -58.1 AC_000017.1 + 27628 0.71 0.239206
Target:  5'- -aCCUCGCCCUCUgauuuucaggugagUUAUACCCUgCCCg -3'
miRNA:   3'- cgGGGGUGGGGGAa-------------AAUAUGGGG-GGG- -5'
608 5' -58.1 AC_000017.1 + 12997 0.73 0.17157
Target:  5'- aGCCCgCACCCCCcaca--GCCCCUgCa -3'
miRNA:   3'- -CGGGgGUGGGGGaaaauaUGGGGGgG- -5'
608 5' -58.1 AC_000017.1 + 10434 0.75 0.109772
Target:  5'- aGCCCCgGCCaCCCUacgcugGCCCCUCUa -3'
miRNA:   3'- -CGGGGgUGG-GGGAaaaua-UGGGGGGG- -5'
608 5' -58.1 AC_000017.1 + 2391 0.79 0.058199
Target:  5'- cCCCCCGCUCCCUcuu-UACCCCCUUu -3'
miRNA:   3'- cGGGGGUGGGGGAaaauAUGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.