miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
609 5' -63 AC_000017.1 + 16276 0.66 0.247957
Target:  5'- -cCGCGCGuuGGGCGGCaguGCCgggUCgGCg -3'
miRNA:   3'- gaGCGCGUu-CCCGCCGg--CGG---AGaCGa -5'
609 5' -63 AC_000017.1 + 33242 0.67 0.20084
Target:  5'- aUCGUGCAucaggauAGGGCGGUgGUg-CUGCa -3'
miRNA:   3'- gAGCGCGU-------UCCCGCCGgCGgaGACGa -5'
609 5' -63 AC_000017.1 + 23943 0.68 0.153996
Target:  5'- -gCGCGCgGGGGGCGGCgGCgaCgGCg -3'
miRNA:   3'- gaGCGCG-UUCCCGCCGgCGgaGaCGa -5'
609 5' -63 AC_000017.1 + 16234 0.69 0.149858
Target:  5'- -aCGCGC---GGCGGCgGCC-CUGCUu -3'
miRNA:   3'- gaGCGCGuucCCGCCGgCGGaGACGA- -5'
609 5' -63 AC_000017.1 + 8567 0.7 0.120244
Target:  5'- gUCGCGCcgcGGGGauGCgGCCUCUuGCa -3'
miRNA:   3'- gAGCGCGu--UCCCgcCGgCGGAGA-CGa -5'
609 5' -63 AC_000017.1 + 11488 0.7 0.116949
Target:  5'- -gCGCGCAcacGuGGCGGCCGCCgacCUGgUa -3'
miRNA:   3'- gaGCGCGUu--C-CCGCCGGCGGa--GACgA- -5'
609 5' -63 AC_000017.1 + 15284 0.71 0.09889
Target:  5'- -cCGCaGCGGGGGCGGCaGCUUCggccGCUg -3'
miRNA:   3'- gaGCG-CGUUCCCGCCGgCGGAGa---CGA- -5'
609 5' -63 AC_000017.1 + 6488 0.71 0.095878
Target:  5'- gCUCGUugguccaGCAGaGGCGGCCGCCcUUGCg -3'
miRNA:   3'- -GAGCG-------CGUUcCCGCCGGCGGaGACGa -5'
609 5' -63 AC_000017.1 + 20879 0.72 0.07667
Target:  5'- cCUCGCGCAAcuGGGCGGCUuuccgaggcuggGCCUUUacGCg -3'
miRNA:   3'- -GAGCGCGUU--CCCGCCGG------------CGGAGA--CGa -5'
609 5' -63 AC_000017.1 + 22733 0.73 0.068407
Target:  5'- aCUCGCGCGcgcAGGGCGGagGCCccaaCUGCg -3'
miRNA:   3'- -GAGCGCGU---UCCCGCCggCGGa---GACGa -5'
609 5' -63 AC_000017.1 + 22103 0.76 0.039452
Target:  5'- -gCGUGCAGGGGCccaacucGGCCGCCuguggccuauUCUGCUg -3'
miRNA:   3'- gaGCGCGUUCCCG-------CCGGCGG----------AGACGA- -5'
609 5' -63 AC_000017.1 + 6561 1.07 0.000122
Target:  5'- gCUCGCGCAAGGGCGGCCGCCUCUGCUg -3'
miRNA:   3'- -GAGCGCGUUCCCGCCGGCGGAGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.