miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6093 3' -53.1 NC_001824.1 + 29525 0.67 0.935222
Target:  5'- -aAGGCGCUGaUGgacAACCGGguACCCc -3'
miRNA:   3'- ggUCCGCGGCaACaguUUGGCU--UGGG- -5'
6093 3' -53.1 NC_001824.1 + 64561 0.67 0.918821
Target:  5'- gUAGGUGCUuauGUUGUUGAACCaguACCUg -3'
miRNA:   3'- gGUCCGCGG---CAACAGUUUGGcu-UGGG- -5'
6093 3' -53.1 NC_001824.1 + 29743 0.68 0.879248
Target:  5'- aCCAGGCGCCc--------CCGGGCCCc -3'
miRNA:   3'- -GGUCCGCGGcaacaguuuGGCUUGGG- -5'
6093 3' -53.1 NC_001824.1 + 80340 1.1 0.00383
Target:  5'- gCCAGGCGCCGUUGUCAAACCGAACCUu -3'
miRNA:   3'- -GGUCCGCGGCAACAGUUUGGCUUGGG- -5'
6093 3' -53.1 NC_001824.1 + 80376 1.13 0.002222
Target:  5'- gCCAGGCGCCGUUGUCAAACCGAACCCc -3'
miRNA:   3'- -GGUCCGCGGCAACAGUUUGGCUUGGG- -5'
6093 3' -53.1 NC_001824.1 + 80412 1.13 0.002222
Target:  5'- gCCAGGCGCCGUUGUCAAACCGAACCCc -3'
miRNA:   3'- -GGUCCGCGGCAACAGUUUGGCUUGGG- -5'
6093 3' -53.1 NC_001824.1 + 80448 1.13 0.002222
Target:  5'- gCCAGGCGCCGUUGUCAAACCGAACCCc -3'
miRNA:   3'- -GGUCCGCGGCAACAGUUUGGCUUGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.