miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6098 5' -44 NC_001824.1 + 101043 0.66 0.99999
Target:  5'- aUACUGaUAuACCuauACCAACGuacgaguguuggaucAGAGCGUg -3'
miRNA:   3'- -AUGACaAUuUGG---UGGUUGU---------------UUUCGCG- -5'
6098 5' -44 NC_001824.1 + 46068 0.66 0.999988
Target:  5'- aACUGUUAAACCAauuaaaaacaugUCAGUAAGuaccauggauGGCGCu -3'
miRNA:   3'- aUGACAAUUUGGU------------GGUUGUUU----------UCGCG- -5'
6098 5' -44 NC_001824.1 + 29762 0.66 0.999983
Target:  5'- aUACUGgccugcuaGGACCACCA-----GGCGCc -3'
miRNA:   3'- -AUGACaa------UUUGGUGGUuguuuUCGCG- -5'
6098 5' -44 NC_001824.1 + 21996 0.67 0.999954
Target:  5'- aUACUGcaAAGCCGCCuaaAACAGGAcCGUa -3'
miRNA:   3'- -AUGACaaUUUGGUGG---UUGUUUUcGCG- -5'
6098 5' -44 NC_001824.1 + 38034 0.67 0.999938
Target:  5'- -cCUGccaUUGAACC-CCAACcuaauGGCGCa -3'
miRNA:   3'- auGAC---AAUUUGGuGGUUGuuu--UCGCG- -5'
6098 5' -44 NC_001824.1 + 97279 0.67 0.999916
Target:  5'- -uCUGUUAAAUCuguucuuguACCAACA--AGCGUc -3'
miRNA:   3'- auGACAAUUUGG---------UGGUUGUuuUCGCG- -5'
6098 5' -44 NC_001824.1 + 97468 0.67 0.999916
Target:  5'- cACUGUucuuuauuuUGAuCCGCUAACGAuuuaacAAGCGUa -3'
miRNA:   3'- aUGACA---------AUUuGGUGGUUGUU------UUCGCG- -5'
6098 5' -44 NC_001824.1 + 79083 0.67 0.999916
Target:  5'- aUGCUGUU--GCCACCGAUcugccAAGUGg -3'
miRNA:   3'- -AUGACAAuuUGGUGGUUGuu---UUCGCg -5'
6098 5' -44 NC_001824.1 + 57376 0.67 0.999851
Target:  5'- -uCUGg--GGCCACUuACAAAcGGCGCa -3'
miRNA:   3'- auGACaauUUGGUGGuUGUUU-UCGCG- -5'
6098 5' -44 NC_001824.1 + 85401 0.68 0.999804
Target:  5'- cUACUGUUuugauaacgaAGGCUuuauuucuugGCCGGCGcuuAAAGCGCa -3'
miRNA:   3'- -AUGACAA----------UUUGG----------UGGUUGU---UUUCGCG- -5'
6098 5' -44 NC_001824.1 + 34817 1.12 0.019286
Target:  5'- uUACUGUUAAACCACCAACAAAAGCGCc -3'
miRNA:   3'- -AUGACAAUUUGGUGGUUGUUUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.