miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
610 3' -56.5 AC_000017.1 + 14000 0.66 0.536676
Target:  5'- aGACCCcgcugacggucGUGCcuuugacgacggguGGGCGgGCGCggGCCGg -3'
miRNA:   3'- gUUGGG-----------UAUG--------------CUCGCgCGCGaaCGGC- -5'
610 3' -56.5 AC_000017.1 + 12962 0.66 0.529036
Target:  5'- --uCCCAcagGCGAcGCGCGaccgugucuaGCUUGCUGa -3'
miRNA:   3'- guuGGGUa--UGCU-CGCGCg---------CGAACGGC- -5'
610 3' -56.5 AC_000017.1 + 17862 0.66 0.496777
Target:  5'- -cGCgCAUGCGAcgguGCGaCGCGCgccGCCGc -3'
miRNA:   3'- guUGgGUAUGCU----CGC-GCGCGaa-CGGC- -5'
610 3' -56.5 AC_000017.1 + 29824 0.67 0.47577
Target:  5'- uGACCCuuauUGCGcuuuucuGCGCGUGCUccacauugGCCGc -3'
miRNA:   3'- gUUGGGu---AUGCu------CGCGCGCGAa-------CGGC- -5'
610 3' -56.5 AC_000017.1 + 18098 0.67 0.465433
Target:  5'- --uCCCAUgaACGGGCGCGaGCcgUGUCGc -3'
miRNA:   3'- guuGGGUA--UGCUCGCGCgCGa-ACGGC- -5'
610 3' -56.5 AC_000017.1 + 8742 0.67 0.432183
Target:  5'- gCAACCUccGUGCGcAGCaccagcuccugcccGCGCGCggcGCCGa -3'
miRNA:   3'- -GUUGGG--UAUGC-UCG--------------CGCGCGaa-CGGC- -5'
610 3' -56.5 AC_000017.1 + 15183 0.68 0.415604
Target:  5'- ---gCCAcACGGGCggaggagaaGCGCGCUgagGCCGa -3'
miRNA:   3'- guugGGUaUGCUCG---------CGCGCGAa--CGGC- -5'
610 3' -56.5 AC_000017.1 + 16314 0.69 0.359456
Target:  5'- uCGGCCgGUGCGAcGUGCGCGgUUaagcaggGCCGc -3'
miRNA:   3'- -GUUGGgUAUGCU-CGCGCGCgAA-------CGGC- -5'
610 3' -56.5 AC_000017.1 + 23312 0.69 0.334684
Target:  5'- gAGCCC--ACGGGCuGCGCGUUgugGCUGc -3'
miRNA:   3'- gUUGGGuaUGCUCG-CGCGCGAa--CGGC- -5'
610 3' -56.5 AC_000017.1 + 12276 0.7 0.310397
Target:  5'- -cGCCgCcgACGuugccAGCGCGCGCgggUGCCa -3'
miRNA:   3'- guUGG-GuaUGC-----UCGCGCGCGa--ACGGc -5'
610 3' -56.5 AC_000017.1 + 31306 0.7 0.302605
Target:  5'- -uGCCCAUuuUGAGCGCaaGCaUGCCGu -3'
miRNA:   3'- guUGGGUAu-GCUCGCGcgCGaACGGC- -5'
610 3' -56.5 AC_000017.1 + 3723 0.71 0.265906
Target:  5'- cCGGCCCAUGgGGGCaUGCGCgUUGUCa -3'
miRNA:   3'- -GUUGGGUAUgCUCGcGCGCG-AACGGc -5'
610 3' -56.5 AC_000017.1 + 5475 0.72 0.239209
Target:  5'- cCAGCCCcuccGCGgcauggcccuuGGCGCGCaGCUUGCCc -3'
miRNA:   3'- -GUUGGGua--UGC-----------UCGCGCG-CGAACGGc -5'
610 3' -56.5 AC_000017.1 + 12332 0.72 0.220686
Target:  5'- gGACCCggcgGUGCGGGCG-GCGCUgcagaGCCa -3'
miRNA:   3'- gUUGGG----UAUGCUCGCgCGCGAa----CGGc -5'
610 3' -56.5 AC_000017.1 + 6723 1.07 0.000554
Target:  5'- uCAACCCAUACGAGCGCGCGCUUGCCGc -3'
miRNA:   3'- -GUUGGGUAUGCUCGCGCGCGAACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.