miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
610 5' -52.4 AC_000017.1 + 13985 0.66 0.740635
Target:  5'- cGGCAGacgaCAGcaGCGUccUGGAUUUGgGAGGGa -3'
miRNA:   3'- -CCGUC----GUC--CGCA--AUCUGAACgUUCCU- -5'
610 5' -52.4 AC_000017.1 + 21925 0.66 0.706745
Target:  5'- uGGC-GCAGGCGa---GCUUGUguGGGGAa -3'
miRNA:   3'- -CCGuCGUCCGCaaucUGAACG--UUCCU- -5'
610 5' -52.4 AC_000017.1 + 6251 0.66 0.703309
Target:  5'- uGGUGGCaaacgacccguagaGGGCGUUGGACagcaacuugGCGAuGGAg -3'
miRNA:   3'- -CCGUCG--------------UCCGCAAUCUGaa-------CGUU-CCU- -5'
610 5' -52.4 AC_000017.1 + 1126 0.66 0.695264
Target:  5'- gGGCAGUGGGUGaUAGAg-UGguGGGu -3'
miRNA:   3'- -CCGUCGUCCGCaAUCUgaACguUCCu -5'
610 5' -52.4 AC_000017.1 + 26711 0.67 0.688343
Target:  5'- aGCGGCGGGCGaaggAGAuguugcccccacaguCUUGCAAGc- -3'
miRNA:   3'- cCGUCGUCCGCaa--UCU---------------GAACGUUCcu -5'
610 5' -52.4 AC_000017.1 + 17734 0.68 0.625392
Target:  5'- aGGCGGCAGGUGa-GGGCcauaucUGCAAGa- -3'
miRNA:   3'- -CCGUCGUCCGCaaUCUGa-----ACGUUCcu -5'
610 5' -52.4 AC_000017.1 + 11085 0.68 0.621883
Target:  5'- aGCAGCGGcaagagcaagagcaGCGgcAGACaUGCAGGGc -3'
miRNA:   3'- cCGUCGUC--------------CGCaaUCUGaACGUUCCu -5'
610 5' -52.4 AC_000017.1 + 9567 0.68 0.602025
Target:  5'- cGGUuaugGGUuGGCGggGGGCUgccgugcgGCAGGGAu -3'
miRNA:   3'- -CCG----UCGuCCGCaaUCUGAa-------CGUUCCU- -5'
610 5' -52.4 AC_000017.1 + 10357 0.68 0.602025
Target:  5'- cGGCGGCuGGCGguagagGGGCcaGCGuAGGGu -3'
miRNA:   3'- -CCGUCGuCCGCaa----UCUGaaCGU-UCCU- -5'
610 5' -52.4 AC_000017.1 + 9755 0.69 0.555721
Target:  5'- cGGCAGCGGGCGgcggucGGGgUUGUuucuggcgGAGGu -3'
miRNA:   3'- -CCGUCGUCCGCaa----UCUgAACG--------UUCCu -5'
610 5' -52.4 AC_000017.1 + 18684 0.7 0.488476
Target:  5'- uGGCGGCAcGGCGcagGGACgcgcgGCuAGGGc -3'
miRNA:   3'- -CCGUCGU-CCGCaa-UCUGaa---CGuUCCU- -5'
610 5' -52.4 AC_000017.1 + 8484 0.71 0.435494
Target:  5'- uGGUGGC-GGCGUcgauGGCUUGCAAGaGGc -3'
miRNA:   3'- -CCGUCGuCCGCAau--CUGAACGUUC-CU- -5'
610 5' -52.4 AC_000017.1 + 8945 0.71 0.415247
Target:  5'- uGGCGGCgAGGuCGUUGGAgaUGCGGGc- -3'
miRNA:   3'- -CCGUCG-UCC-GCAAUCUgaACGUUCcu -5'
610 5' -52.4 AC_000017.1 + 8543 0.77 0.192116
Target:  5'- cGCGGCGGGCGgUGGGCc-GCGGGGGu -3'
miRNA:   3'- cCGUCGUCCGCaAUCUGaaCGUUCCU- -5'
610 5' -52.4 AC_000017.1 + 6688 1.11 0.000674
Target:  5'- uGGCAGCAGGCGUUAGACUUGCAAGGAu -3'
miRNA:   3'- -CCGUCGUCCGCAAUCUGAACGUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.