miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6102 3' -39.3 NC_001826.1 + 104624 0.66 1
Target:  5'- uGGUGGAGGaggggcuggucuuuuUGGaGCGCGGcGUCu -3'
miRNA:   3'- -UUAUUUCC---------------ACC-CGCGCUaUAG- -5'
6102 3' -39.3 NC_001826.1 + 80615 0.68 1
Target:  5'- uAUAAAGGcugaGGGUGCGAcguguucacUAUCu -3'
miRNA:   3'- uUAUUUCCa---CCCGCGCU---------AUAG- -5'
6102 3' -39.3 NC_001826.1 + 8862 0.68 1
Target:  5'- ----cGGGUGGGCGUGc---- -3'
miRNA:   3'- uuauuUCCACCCGCGCuauag -5'
6102 3' -39.3 NC_001826.1 + 70576 0.67 1
Target:  5'- gAGUAGcAGGUGGGUcuacggGUGGUGUg -3'
miRNA:   3'- -UUAUU-UCCACCCG------CGCUAUAg -5'
6102 3' -39.3 NC_001826.1 + 36387 0.67 1
Target:  5'- --cAAAGGgGGGCGUGucuuUCa -3'
miRNA:   3'- uuaUUUCCaCCCGCGCuau-AG- -5'
6102 3' -39.3 NC_001826.1 + 101564 0.66 1
Target:  5'- cAAUAGgccAGGUGGGC-CGAa--- -3'
miRNA:   3'- -UUAUU---UCCACCCGcGCUauag -5'
6102 3' -39.3 NC_001826.1 + 104543 0.66 1
Target:  5'- uGAUGAAGG-GGGCacugGUGGUGa- -3'
miRNA:   3'- -UUAUUUCCaCCCG----CGCUAUag -5'
6102 3' -39.3 NC_001826.1 + 117188 0.66 1
Target:  5'- --gGGAGGaugUGGGCGUGGa--- -3'
miRNA:   3'- uuaUUUCC---ACCCGCGCUauag -5'
6102 3' -39.3 NC_001826.1 + 36115 0.66 1
Target:  5'- --gGAAGGcaaugaUGGGCGUGAg--- -3'
miRNA:   3'- uuaUUUCC------ACCCGCGCUauag -5'
6102 3' -39.3 NC_001826.1 + 91238 0.67 1
Target:  5'- gAGUGGGGGUccaGGGCGCcAUGc- -3'
miRNA:   3'- -UUAUUUCCA---CCCGCGcUAUag -5'
6102 3' -39.3 NC_001826.1 + 118914 0.67 1
Target:  5'- ---cAGGG-GGGCGCGGc--- -3'
miRNA:   3'- uuauUUCCaCCCGCGCUauag -5'
6102 3' -39.3 NC_001826.1 + 107271 0.68 1
Target:  5'- uAGUAu-GGcGGuGCGUGAUGUCa -3'
miRNA:   3'- -UUAUuuCCaCC-CGCGCUAUAG- -5'
6102 3' -39.3 NC_001826.1 + 31029 0.68 1
Target:  5'- -uUGGuGGUGGG-GCGGUGUa -3'
miRNA:   3'- uuAUUuCCACCCgCGCUAUAg -5'
6102 3' -39.3 NC_001826.1 + 76756 0.69 1
Target:  5'- --cAAAGGUGuGGCagauGCGGUAUg -3'
miRNA:   3'- uuaUUUCCAC-CCG----CGCUAUAg -5'
6102 3' -39.3 NC_001826.1 + 110910 0.69 1
Target:  5'- ---cGAGGUGGGUGCa----- -3'
miRNA:   3'- uuauUUCCACCCGCGcuauag -5'
6102 3' -39.3 NC_001826.1 + 75783 0.7 0.999998
Target:  5'- -uUGGAGGcGGGCGCGcUGg- -3'
miRNA:   3'- uuAUUUCCaCCCGCGCuAUag -5'
6102 3' -39.3 NC_001826.1 + 4387 0.7 0.999997
Target:  5'- --cAAAGGcGGGCGCuGAgGUCu -3'
miRNA:   3'- uuaUUUCCaCCCGCG-CUaUAG- -5'
6102 3' -39.3 NC_001826.1 + 46026 0.7 0.999997
Target:  5'- cAUGGAGGUGGGauaGUGAg--- -3'
miRNA:   3'- uUAUUUCCACCCg--CGCUauag -5'
6102 3' -39.3 NC_001826.1 + 26697 0.72 0.999984
Target:  5'- uGUGGAGG-GGGCGUGGg--- -3'
miRNA:   3'- uUAUUUCCaCCCGCGCUauag -5'
6102 3' -39.3 NC_001826.1 + 5620 0.72 0.999967
Target:  5'- --gGAAGGUGGGUuaGAggGUCu -3'
miRNA:   3'- uuaUUUCCACCCGcgCUa-UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.