miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6102 5' -47.4 NC_001826.1 + 43068 0.66 0.995725
Target:  5'- uGGUUGCUGCaACCcuucaUCCACUUg- -3'
miRNA:   3'- uCCAAUGGCG-UGG-----AGGUGGAaa -5'
6102 5' -47.4 NC_001826.1 + 117759 0.66 0.995725
Target:  5'- cAGG--GCCGUACUUCCAuCCUc- -3'
miRNA:   3'- -UCCaaUGGCGUGGAGGU-GGAaa -5'
6102 5' -47.4 NC_001826.1 + 110583 0.66 0.994941
Target:  5'- cGGGUUGCUGCugcuaacacuCCUCCAUgUUc -3'
miRNA:   3'- -UCCAAUGGCGu---------GGAGGUGgAAa -5'
6102 5' -47.4 NC_001826.1 + 38695 0.67 0.993024
Target:  5'- uGGUUuaagGCCGcCACCgCCACCg-- -3'
miRNA:   3'- uCCAA----UGGC-GUGGaGGUGGaaa -5'
6102 5' -47.4 NC_001826.1 + 32502 0.67 0.990566
Target:  5'- uGGUUGCUaC-CCUCUACCUUUu -3'
miRNA:   3'- uCCAAUGGcGuGGAGGUGGAAA- -5'
6102 5' -47.4 NC_001826.1 + 63078 0.67 0.989106
Target:  5'- uGGGUUAUUGgauuaUGCCUCCACCg-- -3'
miRNA:   3'- -UCCAAUGGC-----GUGGAGGUGGaaa -5'
6102 5' -47.4 NC_001826.1 + 25879 0.67 0.989106
Target:  5'- cAGaGUUGCCGCACCgaaACCa-- -3'
miRNA:   3'- -UC-CAAUGGCGUGGaggUGGaaa -5'
6102 5' -47.4 NC_001826.1 + 76901 0.68 0.985661
Target:  5'- aAGGcaUACCGCAUCUgccaCACCUUUg -3'
miRNA:   3'- -UCCa-AUGGCGUGGAg---GUGGAAA- -5'
6102 5' -47.4 NC_001826.1 + 10181 0.68 0.97901
Target:  5'- cAGGUUACUGU-CUUCCGCCc-- -3'
miRNA:   3'- -UCCAAUGGCGuGGAGGUGGaaa -5'
6102 5' -47.4 NC_001826.1 + 642 0.69 0.966903
Target:  5'- cAGGa-ACCGCugCUCUACCg-- -3'
miRNA:   3'- -UCCaaUGGCGugGAGGUGGaaa -5'
6102 5' -47.4 NC_001826.1 + 4820 0.69 0.963231
Target:  5'- uAGGUccaguuuuUACUGCACCugcagcUCCACCUa- -3'
miRNA:   3'- -UCCA--------AUGGCGUGG------AGGUGGAaa -5'
6102 5' -47.4 NC_001826.1 + 28628 0.8 0.476337
Target:  5'- cGGccGCCGCGCCUCCACCc-- -3'
miRNA:   3'- uCCaaUGGCGUGGAGGUGGaaa -5'
6102 5' -47.4 NC_001826.1 + 1799 1.03 0.021651
Target:  5'- gAGGUUACCGCACCUCCACCUUUa -3'
miRNA:   3'- -UCCAAUGGCGUGGAGGUGGAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.