miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6103 3' -52.6 NC_001826.1 + 68770 0.66 0.961028
Target:  5'- --cUGUGGCgGaagaagGGCCAGGgcuaaugggugaaaaUGGCCCc -3'
miRNA:   3'- cauACAUUGgUa-----CCGGUCCa--------------ACCGGG- -5'
6103 3' -52.6 NC_001826.1 + 4931 0.66 0.952742
Target:  5'- --cUGggGCCuUGGCCAGGguaGCUCa -3'
miRNA:   3'- cauACauUGGuACCGGUCCaacCGGG- -5'
6103 3' -52.6 NC_001826.1 + 86863 0.66 0.948408
Target:  5'- ---cGUGGuCCAgcugggcauauUGGCCAGGagauaagaGGCCCa -3'
miRNA:   3'- cauaCAUU-GGU-----------ACCGGUCCaa------CCGGG- -5'
6103 3' -52.6 NC_001826.1 + 107520 0.66 0.945686
Target:  5'- -aGUGgGACCcgGGCguGGUccaguauccugggucUGGCCg -3'
miRNA:   3'- caUACaUUGGuaCCGguCCA---------------ACCGGg -5'
6103 3' -52.6 NC_001826.1 + 101579 0.66 0.94382
Target:  5'- gGUGUGgauaguUGGCaauaGGCCAGGUgGGCCg -3'
miRNA:   3'- -CAUAC------AUUGgua-CCGGUCCAaCCGGg -5'
6103 3' -52.6 NC_001826.1 + 113065 0.66 0.94382
Target:  5'- --cUGUAAUUGUGGUguGGUggcaggUGGCCa -3'
miRNA:   3'- cauACAUUGGUACCGguCCA------ACCGGg -5'
6103 3' -52.6 NC_001826.1 + 64814 0.68 0.90439
Target:  5'- -cAUGggGGCCA-GGCCAauGGUUuGGCCUu -3'
miRNA:   3'- caUACa-UUGGUaCCGGU--CCAA-CCGGG- -5'
6103 3' -52.6 NC_001826.1 + 79986 0.68 0.890788
Target:  5'- gGUAUGUAGCCAgucaaguuUGGCUuucaAGGUagGGUCa -3'
miRNA:   3'- -CAUACAUUGGU--------ACCGG----UCCAa-CCGGg -5'
6103 3' -52.6 NC_001826.1 + 72721 0.69 0.844163
Target:  5'- ---gGUGACUcacuugggggcGUGGCCaaAGGUUGGCUa -3'
miRNA:   3'- cauaCAUUGG-----------UACCGG--UCCAACCGGg -5'
6103 3' -52.6 NC_001826.1 + 118556 0.71 0.750592
Target:  5'- ---gGgcGCCggGGCCGGaGcUGGCCCu -3'
miRNA:   3'- cauaCauUGGuaCCGGUC-CaACCGGG- -5'
6103 3' -52.6 NC_001826.1 + 2217 0.72 0.730174
Target:  5'- -aAUGuUGACCAcagaUGGCCAGuGagcuaugcuUUGGCCCa -3'
miRNA:   3'- caUAC-AUUGGU----ACCGGUC-C---------AACCGGG- -5'
6103 3' -52.6 NC_001826.1 + 10583 0.72 0.713567
Target:  5'- -gGUGUccACCcgGGUCccucacagacugcguGGGUUGGCCCa -3'
miRNA:   3'- caUACAu-UGGuaCCGG---------------UCCAACCGGG- -5'
6103 3' -52.6 NC_001826.1 + 47155 0.76 0.49822
Target:  5'- -gGUGUGACacugcgGGCCAGGg-GGCCCc -3'
miRNA:   3'- caUACAUUGgua---CCGGUCCaaCCGGG- -5'
6103 3' -52.6 NC_001826.1 + 2566 1.13 0.002202
Target:  5'- aGUAUGUAACCAUGGCCAGGUUGGCCCa -3'
miRNA:   3'- -CAUACAUUGGUACCGGUCCAACCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.