miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6104 3' -58.2 NC_001826.1 + 2429 0.66 0.773729
Target:  5'- aUGCCAuauuuaUGCCUGUUGUaguuuaccaGGAAGGUGGUc -3'
miRNA:   3'- gACGGU------GCGGGUGACA---------CCUUCCACCG- -5'
6104 3' -58.2 NC_001826.1 + 42077 0.66 0.773729
Target:  5'- -gGCCGCGCCCuucuugaaACU-UGGguGG-GGCa -3'
miRNA:   3'- gaCGGUGCGGG--------UGAcACCuuCCaCCG- -5'
6104 3' -58.2 NC_001826.1 + 112269 0.66 0.773729
Target:  5'- -cGCCACGCCC-CUcuaGaGAAGaUGGCg -3'
miRNA:   3'- gaCGGUGCGGGuGAca-C-CUUCcACCG- -5'
6104 3' -58.2 NC_001826.1 + 29636 0.66 0.753719
Target:  5'- -gGCCuuuGCGCCCucggcaaACgccGGggGGUGGUg -3'
miRNA:   3'- gaCGG---UGCGGG-------UGacaCCuuCCACCG- -5'
6104 3' -58.2 NC_001826.1 + 113057 0.66 0.7352
Target:  5'- --uCCugGUCCuguaAUUGUGGuguGGUGGCa -3'
miRNA:   3'- gacGGugCGGG----UGACACCuu-CCACCG- -5'
6104 3' -58.2 NC_001826.1 + 651 0.67 0.725319
Target:  5'- uCUGCuCACuGCCCGggccCUccGGGAGGUGaGCa -3'
miRNA:   3'- -GACG-GUG-CGGGU----GAcaCCUUCCAC-CG- -5'
6104 3' -58.2 NC_001826.1 + 17071 0.67 0.715356
Target:  5'- gCUGUCAaaguCGCCCACUucccacucGUGGGccuGaGUGGCc -3'
miRNA:   3'- -GACGGU----GCGGGUGA--------CACCUu--C-CACCG- -5'
6104 3' -58.2 NC_001826.1 + 28935 0.67 0.705322
Target:  5'- -gGCCACuGCCCGCgUGUGGGuAGcucaGGCc -3'
miRNA:   3'- gaCGGUG-CGGGUG-ACACCU-UCca--CCG- -5'
6104 3' -58.2 NC_001826.1 + 3500 0.67 0.705322
Target:  5'- gUGCCACcuUCCACaGUGGGc-GUGGCa -3'
miRNA:   3'- gACGGUGc-GGGUGaCACCUucCACCG- -5'
6104 3' -58.2 NC_001826.1 + 119047 0.67 0.684058
Target:  5'- -cGCCGCGCCCccCUGccgggggcUGGAcccccuccgccggGGGUGGg -3'
miRNA:   3'- gaCGGUGCGGGu-GAC--------ACCU-------------UCCACCg -5'
6104 3' -58.2 NC_001826.1 + 25046 0.68 0.664651
Target:  5'- -aGCCAgCGCCUcuuACgugaugGUGGAAGGgcccgGGUg -3'
miRNA:   3'- gaCGGU-GCGGG---UGa-----CACCUUCCa----CCG- -5'
6104 3' -58.2 NC_001826.1 + 38525 0.68 0.664651
Target:  5'- -aGCaGCGCuCCGCcGUGGAucuuggagacGGUGGCg -3'
miRNA:   3'- gaCGgUGCG-GGUGaCACCUu---------CCACCG- -5'
6104 3' -58.2 NC_001826.1 + 24755 0.68 0.644121
Target:  5'- uUGCCACGUCUgaaGCggGUGGAgaGGGUcucacgGGCu -3'
miRNA:   3'- gACGGUGCGGG---UGa-CACCU--UCCA------CCG- -5'
6104 3' -58.2 NC_001826.1 + 16911 0.69 0.552157
Target:  5'- -gGCCACucagGCCCACgaGUGGGAaGUGGg -3'
miRNA:   3'- gaCGGUG----CGGGUGa-CACCUUcCACCg -5'
6104 3' -58.2 NC_001826.1 + 16024 0.72 0.401645
Target:  5'- cCU-CCACuGUCCAauCUGUGG-AGGUGGCg -3'
miRNA:   3'- -GAcGGUG-CGGGU--GACACCuUCCACCG- -5'
6104 3' -58.2 NC_001826.1 + 118326 0.74 0.300271
Target:  5'- cCUGCC-UGCCCAgggGUGGggGGUaggGGCu -3'
miRNA:   3'- -GACGGuGCGGGUga-CACCuuCCA---CCG- -5'
6104 3' -58.2 NC_001826.1 + 3647 1.12 0.000827
Target:  5'- gCUGCCACGCCCACUGUGGAAGGUGGCa -3'
miRNA:   3'- -GACGGUGCGGGUGACACCUUCCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.