miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6104	5'	-48.3	NC_001826.1	+	59576	0.66	0.99769
	Target:  5'- gGUGGCAGCAccUCUACUccguccguggaUAAUuGGACUu- -3' miRNA:   3'- -CACUGUCGU--AGGUGA-----------AUUA-CCUGAcu -5'
6104	5'	-48.3	NC_001826.1	+	8003	0.66	0.996704
	Target:  5'- cUGACAgGgGUCCACUUucugcaaGGACUGu -3' miRNA:   3'- cACUGU-CgUAGGUGAAuua----CCUGACu -5'
6104	5'	-48.3	NC_001826.1	+	41247	0.66	0.996093
	Target:  5'- -aGGCAGCAggggCCAU--AAUGGACg-- -3' miRNA:   3'- caCUGUCGUa---GGUGaaUUACCUGacu -5'
6104	5'	-48.3	NC_001826.1	+	4543	0.67	0.99244
	Target:  5'- uUGAgAGCAUCCACcaggccacGGAUUGGg -3' miRNA:   3'- cACUgUCGUAGGUGaauua---CCUGACU- -5'
6104	5'	-48.3	NC_001826.1	+	45074	0.68	0.98539
	Target:  5'- -gGuCAGCAUCCACUU-GUGGAg--- -3' miRNA:   3'- caCuGUCGUAGGUGAAuUACCUgacu -5'
6104	5'	-48.3	NC_001826.1	+	98583	0.69	0.981286
	Target:  5'- cUGACAGCGUCCA-----UGGACa-- -3' miRNA:   3'- cACUGUCGUAGGUgaauuACCUGacu -5'
6104	5'	-48.3	NC_001826.1	+	119146	0.69	0.976374
	Target:  5'- -cGGCAGCAgaggggaCCGCgccggGGGCUGAa -3' miRNA:   3'- caCUGUCGUa------GGUGaauuaCCUGACU- -5'
6104	5'	-48.3	NC_001826.1	+	3612	1.1	0.009464
	Target:  5'- gGUGACAGCAUCCACUUAAUGGACUGAa -3' miRNA:   3'- -CACUGUCGUAGGUGAAUUACCUGACU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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