miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6105 3' -44.4 NC_001826.1 + 102523 0.66 0.99999
Target:  5'- -cAAGGAAGAGCUaCACcaguguuGUGAuuUAGUa -3'
miRNA:   3'- caUUUCUUCUCGA-GUG-------UACUcuAUCG- -5'
6105 3' -44.4 NC_001826.1 + 106056 0.66 0.999986
Target:  5'- -aAGGGAAGaAGCUCugG-GAGGgaucaauUAGCa -3'
miRNA:   3'- caUUUCUUC-UCGAGugUaCUCU-------AUCG- -5'
6105 3' -44.4 NC_001826.1 + 16672 0.66 0.999981
Target:  5'- -aGAGGAuuuGAGUacuuUCGCGugugUGGGGUGGCu -3'
miRNA:   3'- caUUUCUu--CUCG----AGUGU----ACUCUAUCG- -5'
6105 3' -44.4 NC_001826.1 + 80003 0.66 0.999974
Target:  5'- aGUGAGGggGAuGCUUA-AUGGGAUcuguuuGGCc -3'
miRNA:   3'- -CAUUUCuuCU-CGAGUgUACUCUA------UCG- -5'
6105 3' -44.4 NC_001826.1 + 118853 0.67 0.999964
Target:  5'- -gGAAGAGGGGCUCGggcccugcUcgGGGAU-GCc -3'
miRNA:   3'- caUUUCUUCUCGAGU--------GuaCUCUAuCG- -5'
6105 3' -44.4 NC_001826.1 + 20168 0.67 0.999964
Target:  5'- -aGGAGGAGAGCUCugGaUGAuGAcAGa -3'
miRNA:   3'- caUUUCUUCUCGAGugU-ACU-CUaUCg -5'
6105 3' -44.4 NC_001826.1 + 4480 0.67 0.999934
Target:  5'- --uAAGAuccAGGGCUCGC-UGGGAcGGUa -3'
miRNA:   3'- cauUUCU---UCUCGAGUGuACUCUaUCG- -5'
6105 3' -44.4 NC_001826.1 + 41627 0.67 0.999934
Target:  5'- cUGGAGAGGAGUUCcaGCAUGAucacauucuuGGUuauGGCa -3'
miRNA:   3'- cAUUUCUUCUCGAG--UGUACU----------CUA---UCG- -5'
6105 3' -44.4 NC_001826.1 + 29541 0.68 0.999736
Target:  5'- cUGGGGuAGAGUUCAUcaagugugGUGAGAUGGa -3'
miRNA:   3'- cAUUUCuUCUCGAGUG--------UACUCUAUCg -5'
6105 3' -44.4 NC_001826.1 + 78570 0.69 0.999135
Target:  5'- aGUAAAGAucgaGGGGCUUcaaagucagaagACGcgGAGGUAGCc -3'
miRNA:   3'- -CAUUUCU----UCUCGAG------------UGUa-CUCUAUCG- -5'
6105 3' -44.4 NC_001826.1 + 9249 0.7 0.998651
Target:  5'- aGUGccAGGAGGGGCUggUugAUGAGAuuuauggUAGCa -3'
miRNA:   3'- -CAU--UUCUUCUCGA--GugUACUCU-------AUCG- -5'
6105 3' -44.4 NC_001826.1 + 114267 0.7 0.99803
Target:  5'- cUAAAGAAGAugcuGUUCGaggGGGGUAGCg -3'
miRNA:   3'- cAUUUCUUCU----CGAGUguaCUCUAUCG- -5'
6105 3' -44.4 NC_001826.1 + 33168 0.7 0.99803
Target:  5'- -aAAAGAGGGGgUgGCAU-AGGUGGCa -3'
miRNA:   3'- caUUUCUUCUCgAgUGUAcUCUAUCG- -5'
6105 3' -44.4 NC_001826.1 + 20624 0.71 0.995921
Target:  5'- -cAAGGAGGGGCcCACA-GGGcgGGCu -3'
miRNA:   3'- caUUUCUUCUCGaGUGUaCUCuaUCG- -5'
6105 3' -44.4 NC_001826.1 + 52445 0.72 0.993345
Target:  5'- -gGAAGAAGAauGCUguCGUG-GGUGGCa -3'
miRNA:   3'- caUUUCUUCU--CGAguGUACuCUAUCG- -5'
6105 3' -44.4 NC_001826.1 + 23163 0.74 0.974637
Target:  5'- uGUGGGGAAGA-CUCACggGGGGUGGa -3'
miRNA:   3'- -CAUUUCUUCUcGAGUGuaCUCUAUCg -5'
6105 3' -44.4 NC_001826.1 + 3926 1.14 0.014961
Target:  5'- gGUAAAGAAGAGCUCACAUGAGAUAGCu -3'
miRNA:   3'- -CAUUUCUUCUCGAGUGUACUCUAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.