miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6106 3' -55.1 NC_001826.1 + 115032 0.67 0.868658
Target:  5'- uCUGGCcCACGCCaccauguacuGGAGGUC-UGGUUUc -3'
miRNA:   3'- -GAUCGuGUGCGG----------CCUUCAGuGCCAGA- -5'
6106 3' -55.1 NC_001826.1 + 88030 0.68 0.810576
Target:  5'- -aGGCACGCGCauacuuuggccUGGAcauggucugcgaGGUUugGGUCUg -3'
miRNA:   3'- gaUCGUGUGCG-----------GCCU------------UCAGugCCAGA- -5'
6106 3' -55.1 NC_001826.1 + 117525 0.68 0.791409
Target:  5'- -gGGCGCAUGCCcaggugacgucuuGaGAGGUCACGGg-- -3'
miRNA:   3'- gaUCGUGUGCGG-------------C-CUUCAGUGCCaga -5'
6106 3' -55.1 NC_001826.1 + 29622 0.69 0.773497
Target:  5'- -cGGCAaACGCCGGGgggugguggcAGUCuAUGGUCa -3'
miRNA:   3'- gaUCGUgUGCGGCCU----------UCAG-UGCCAGa -5'
6106 3' -55.1 NC_001826.1 + 5413 1.07 0.003585
Target:  5'- gCUAGCACACGCCGGAAGUCACGGUCUu -3'
miRNA:   3'- -GAUCGUGUGCGGCCUUCAGUGCCAGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.