Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6106 | 5' | -57.2 | NC_001826.1 | + | 100817 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 100018 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 100118 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 100218 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 100318 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 100418 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 100518 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 100618 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 100718 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 99918 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 99818 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 99719 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 98919 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 99019 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 99119 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 99219 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 99319 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 99419 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 99519 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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6106 | 5' | -57.2 | NC_001826.1 | + | 99619 | 0.73 | 0.429665 |
Target: 5'- gCGAGggaGCGGGCUgCCCGGCCcggggUGCGGGu -3' miRNA: 3'- -GCUC---UGUCUGAaGGGCCGGu----GCGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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