Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6108 | 3' | -48.4 | NC_001826.1 | + | 119448 | 0.66 | 0.99773 |
Target: 5'- gGCUGAgaGCCagGCgAGGGGAGAGggGg -3' miRNA: 3'- -CGACUgcUGG--CGgUCCUUUUUCuuUg -5' |
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6108 | 3' | -48.4 | NC_001826.1 | + | 118871 | 0.66 | 0.99773 |
Target: 5'- gGCU--CGACCcCCcaggGGGGAAGAGggGCu -3' miRNA: 3'- -CGAcuGCUGGcGG----UCCUUUUUCuuUG- -5' |
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6108 | 3' | -48.4 | NC_001826.1 | + | 118622 | 0.66 | 0.99773 |
Target: 5'- uGCUGAgGGCCaaaaCAGGu-AGGGGAGCc -3' miRNA: 3'- -CGACUgCUGGcg--GUCCuuUUUCUUUG- -5' |
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6108 | 3' | -48.4 | NC_001826.1 | + | 32224 | 0.66 | 0.99773 |
Target: 5'- uGCUGAgGGCCGagcuggauaaCCuGGAaauccuagAAAGGggGCa -3' miRNA: 3'- -CGACUgCUGGC----------GGuCCU--------UUUUCuuUG- -5' |
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6108 | 3' | -48.4 | NC_001826.1 | + | 8711 | 1.12 | 0.008043 |
Target: 5'- gGCUGACGACCGCCAGGAAAAAGAAACc -3' miRNA: 3'- -CGACUGCUGGCGGUCCUUUUUCUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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