miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
611 5' -62.9 AC_000017.1 + 33289 0.66 0.269939
Target:  5'- aCUGCUGCCG-CCGCCGCuccGUcCUgCAGg -3'
miRNA:   3'- -GGCGACGGCgGGCGGUGc--CAcGA-GUC- -5'
611 5' -62.9 AC_000017.1 + 16217 0.66 0.269939
Target:  5'- cCCGgcaCUGCCGCCCaacgcgcgGCgGCGGcccUGCUUAa -3'
miRNA:   3'- -GGC---GACGGCGGG--------CGgUGCC---ACGAGUc -5'
611 5' -62.9 AC_000017.1 + 17816 0.66 0.250372
Target:  5'- aCGCaUGCCGCCCGUCA-GGccgugGC-CGGc -3'
miRNA:   3'- gGCG-ACGGCGGGCGGUgCCa----CGaGUC- -5'
611 5' -62.9 AC_000017.1 + 12143 0.66 0.248481
Target:  5'- gCCGCUGCCcguGCCaGCCAgGGcccuuugcaggcugUGCaUCAGc -3'
miRNA:   3'- -GGCGACGG---CGGgCGGUgCC--------------ACG-AGUC- -5'
611 5' -62.9 AC_000017.1 + 8600 0.67 0.22612
Target:  5'- cCCGCggcccaCCGCCCGCCgcGCGGUaccguagucGCgccgCGGg -3'
miRNA:   3'- -GGCGac----GGCGGGCGG--UGCCA---------CGa---GUC- -5'
611 5' -62.9 AC_000017.1 + 3668 0.68 0.188482
Target:  5'- gCGCaUGCC-CCCauggGCCGgGGUGCgUCAGa -3'
miRNA:   3'- gGCG-ACGGcGGG----CGGUgCCACG-AGUC- -5'
611 5' -62.9 AC_000017.1 + 5366 0.69 0.152317
Target:  5'- -gGCUGCgCGCUgGCCAgGGUGCg--- -3'
miRNA:   3'- ggCGACG-GCGGgCGGUgCCACGaguc -5'
611 5' -62.9 AC_000017.1 + 6706 0.71 0.112866
Target:  5'- gCGCuUGCCGCCCGCgCAUGGcagcagGCgUUAGa -3'
miRNA:   3'- gGCG-ACGGCGGGCG-GUGCCa-----CG-AGUC- -5'
611 5' -62.9 AC_000017.1 + 26808 0.71 0.109796
Target:  5'- uUGCUGCCG-CUGCCGcCGGUGCagUAGg -3'
miRNA:   3'- gGCGACGGCgGGCGGU-GCCACGa-GUC- -5'
611 5' -62.9 AC_000017.1 + 15230 0.71 0.109796
Target:  5'- -aGCUGCCGCCCccGCUGCGGagGCUgCAc -3'
miRNA:   3'- ggCGACGGCGGG--CGGUGCCa-CGA-GUc -5'
611 5' -62.9 AC_000017.1 + 16330 0.72 0.092963
Target:  5'- cUCGCaugGCCGCCCGUCGgcCGGUGCg--- -3'
miRNA:   3'- -GGCGa--CGGCGGGCGGU--GCCACGaguc -5'
611 5' -62.9 AC_000017.1 + 9799 1.09 0.000116
Target:  5'- cCCGCUGCCGCCCGCCACGGUGCUCAGc -3'
miRNA:   3'- -GGCGACGGCGGGCGGUGCCACGAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.