Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6111 | 5' | -52.6 | NC_001826.1 | + | 99381 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 99481 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 99581 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 99681 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 99880 | 0.66 | 0.956328 |
Target: 5'- --cGGCGGGAUGGGggGaaccggggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa-------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 56457 | 0.66 | 0.952252 |
Target: 5'- uCUGGCGAugGACAGGUaaaGUGuuGAGUg -3' miRNA: 3'- cGACCGCU--CUGUCCAa--CACcuUUCGg -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 119076 | 0.67 | 0.947929 |
Target: 5'- gGCgGGcCGGGGCGGGg---GGAAccggGGCCc -3' miRNA: 3'- -CGaCC-GCUCUGUCCaacaCCUU----UCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 99781 | 0.67 | 0.938524 |
Target: 5'- --cGGCGGGAUGGGggGaaccgggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 100780 | 0.67 | 0.938524 |
Target: 5'- --cGGCGGGAUGGGggGaaccgggGGAcgGGGCCc -3' miRNA: 3'- cgaCCGCUCUGUCCaaCa------CCU--UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 69113 | 0.67 | 0.928094 |
Target: 5'- aUUGGCGGGGCGGGc-GUu--GAGCCa -3' miRNA: 3'- cGACCGCUCUGUCCaaCAccuUUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 17888 | 0.67 | 0.928094 |
Target: 5'- uUUGGUGGGGCggGGGUUGguucUGGGucGCUg -3' miRNA: 3'- cGACCGCUCUG--UCCAAC----ACCUuuCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 28308 | 0.68 | 0.922492 |
Target: 5'- aGCUcgGGCGAGGgcCGGGaagGUGGGggaaccGGGCCc -3' miRNA: 3'- -CGA--CCGCUCU--GUCCaa-CACCU------UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 76175 | 0.68 | 0.904144 |
Target: 5'- uCUGGCGAGGguguuGGUgGUGGGucGUCg -3' miRNA: 3'- cGACCGCUCUgu---CCAaCACCUuuCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 114696 | 0.68 | 0.897519 |
Target: 5'- gGCUGGcCGGGAaacacaauUAGGagcacuuuugGUGGAGAGCUc -3' miRNA: 3'- -CGACC-GCUCU--------GUCCaa--------CACCUUUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 13499 | 0.69 | 0.86857 |
Target: 5'- aGCUGGC-AGACAGGgauucugUGcUGGAaGAGUUg -3' miRNA: 3'- -CGACCGcUCUGUCCa------AC-ACCU-UUCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 91797 | 0.73 | 0.64782 |
Target: 5'- cCUGaGUGAGGCAGuauuacacaGUUGUGGGAcAGCCu -3' miRNA: 3'- cGAC-CGCUCUGUC---------CAACACCUU-UCGG- -5' |
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6111 | 5' | -52.6 | NC_001826.1 | + | 25771 | 1.14 | 0.002143 |
Target: 5'- gGCUGGCGAGACAGGUUGUGGAAAGCCu -3' miRNA: 3'- -CGACCGCUCUGUCCAACACCUUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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