miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6114 5' -49.8 NC_001826.1 + 37014 0.66 0.990605
Target:  5'- --uUGUGGG-GG-UGUGUGGGCGg-- -3'
miRNA:   3'- uauGCACCCuCCuAUACACCUGUauu -5'
6114 5' -49.8 NC_001826.1 + 104736 0.66 0.987656
Target:  5'- uUGCGUGuagucGGuGGggAUGUGGGCAUu- -3'
miRNA:   3'- uAUGCAC-----CCuCCuaUACACCUGUAuu -5'
6114 5' -49.8 NC_001826.1 + 1946 0.68 0.961269
Target:  5'- uUugGUGGGAGGcuagAUGgucGUGGGCGg-- -3'
miRNA:   3'- uAugCACCCUCC----UAUa--CACCUGUauu -5'
6114 5' -49.8 NC_001826.1 + 40094 0.68 0.957344
Target:  5'- gAUAUGUGGuuaccGGGGAcagaUAUGUGGGCAa-- -3'
miRNA:   3'- -UAUGCACC-----CUCCU----AUACACCUGUauu -5'
6114 5' -49.8 NC_001826.1 + 117179 0.72 0.812748
Target:  5'- -cACGgggucGGGAGGA--UGUGGGCGUGGa -3'
miRNA:   3'- uaUGCa----CCCUCCUauACACCUGUAUU- -5'
6114 5' -49.8 NC_001826.1 + 30030 1.05 0.013399
Target:  5'- uAUACGUGGGAGGAUAUGUGGACAUAAa -3'
miRNA:   3'- -UAUGCACCCUCCUAUACACCUGUAUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.