Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6115 | 5' | -58 | NC_001826.1 | + | 32086 | 1.08 | 0.001799 |
Target: 5'- gCCUUCCCCCUUCCAGUCGGGUGGAGUc -3' miRNA: 3'- -GGAAGGGGGAAGGUCAGCCCACCUCA- -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 10940 | 0.69 | 0.599116 |
Target: 5'- gCUaCCCaggguuugcaCUUCagGGUCGGGUGGAGUg -3' miRNA: 3'- gGAaGGGg---------GAAGg-UCAGCCCACCUCA- -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 100168 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 100268 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 100368 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 100468 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 100568 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 100668 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 100768 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 100867 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 100068 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 99968 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 99169 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 99269 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 99369 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 99469 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 99569 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 99669 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 99769 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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6115 | 5' | -58 | NC_001826.1 | + | 99868 | 0.68 | 0.680415 |
Target: 5'- gCCggUCCCCC--CCGG-CGGGaUGGGGg -3' miRNA: 3'- -GGa-AGGGGGaaGGUCaGCCC-ACCUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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