miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6116 5' -56.3 NC_001826.1 + 54390 0.66 0.82119
Target:  5'- cGGGACgUGACCCCagauauaaaguaUGCAGuGU-GCCa -3'
miRNA:   3'- aCCUUG-ACUGGGG------------ACGUCuCAgUGGc -5'
6116 5' -56.3 NC_001826.1 + 69731 0.66 0.82119
Target:  5'- cGGAgGCUGACCCCaaaGCGG---CACCGu -3'
miRNA:   3'- aCCU-UGACUGGGGa--CGUCucaGUGGC- -5'
6116 5' -56.3 NC_001826.1 + 118256 0.67 0.794318
Target:  5'- gGGGGCUGGaggggggaagaCCCUGCcagGGAGUC-CCa -3'
miRNA:   3'- aCCUUGACUg----------GGGACG---UCUCAGuGGc -5'
6116 5' -56.3 NC_001826.1 + 28241 0.67 0.794318
Target:  5'- gGGAACcgGGCCCCaGCucgGGAGgggGCCGg -3'
miRNA:   3'- aCCUUGa-CUGGGGaCG---UCUCag-UGGC- -5'
6116 5' -56.3 NC_001826.1 + 28282 0.67 0.794318
Target:  5'- gGGAACcgGGCCCCaGCucgGGAGgggGCCGg -3'
miRNA:   3'- aCCUUGa-CUGGGGaCG---UCUCag-UGGC- -5'
6116 5' -56.3 NC_001826.1 + 5221 0.68 0.726767
Target:  5'- cGGGgcGCUGACUgCUGCAGAacugccaaGUCugCa -3'
miRNA:   3'- aCCU--UGACUGGgGACGUCU--------CAGugGc -5'
6116 5' -56.3 NC_001826.1 + 31001 0.68 0.723756
Target:  5'- aGGAACUGAucagggccaaacagUCCCUG-AGAGUCAgCu -3'
miRNA:   3'- aCCUUGACU--------------GGGGACgUCUCAGUgGc -5'
6116 5' -56.3 NC_001826.1 + 43490 0.69 0.706563
Target:  5'- aUGGGGuacagcucaacuCUGAUUCCUGCuAGAGUUGCUGg -3'
miRNA:   3'- -ACCUU------------GACUGGGGACG-UCUCAGUGGC- -5'
6116 5' -56.3 NC_001826.1 + 91542 0.69 0.675792
Target:  5'- gUGGAAUUGAUa--UGCGGuGUCACCa -3'
miRNA:   3'- -ACCUUGACUGgggACGUCuCAGUGGc -5'
6116 5' -56.3 NC_001826.1 + 118544 0.7 0.634289
Target:  5'- cGGAGCUGGCCCU--CGGAG--GCCGg -3'
miRNA:   3'- aCCUUGACUGGGGacGUCUCagUGGC- -5'
6116 5' -56.3 NC_001826.1 + 22282 0.73 0.482212
Target:  5'- cUGGuGCgUGACCUg-GCAGGGUCACCa -3'
miRNA:   3'- -ACCuUG-ACUGGGgaCGUCUCAGUGGc -5'
6116 5' -56.3 NC_001826.1 + 118302 0.74 0.408407
Target:  5'- aGGGGCUGGgcCCCCUgGCAGGGagGCUGg -3'
miRNA:   3'- aCCUUGACU--GGGGA-CGUCUCagUGGC- -5'
6116 5' -56.3 NC_001826.1 + 32579 1.08 0.0023
Target:  5'- uUGGAACUGACCCCUGCAGAGUCACCGc -3'
miRNA:   3'- -ACCUUGACUGGGGACGUCUCAGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.