miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6118 3' -60.1 NC_001826.1 + 74419 1.05 0.001379
Target:  5'- aAACCAGGCCUGGAGAGUACCUGGGGUa -3'
miRNA:   3'- -UUGGUCCGGACCUCUCAUGGACCCCA- -5'
6118 3' -60.1 NC_001826.1 + 118830 0.75 0.206942
Target:  5'- gGGCCGGGCggGGGGAGUGCCccucccGGGGa -3'
miRNA:   3'- -UUGGUCCGgaCCUCUCAUGGa-----CCCCa -5'
6118 3' -60.1 NC_001826.1 + 28239 0.71 0.333623
Target:  5'- gAACCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- -UUGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 28280 0.71 0.333623
Target:  5'- gAACCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- -UUGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 118217 0.7 0.398185
Target:  5'- cGGCCcaGGGCUcgggagUGGGGGGUGCUggGGGGUg -3'
miRNA:   3'- -UUGG--UCCGG------ACCUCUCAUGGa-CCCCA- -5'
6118 3' -60.1 NC_001826.1 + 68382 0.69 0.442399
Target:  5'- gAACCAGGgUUgGGGGAGUugCauaGGGGUa -3'
miRNA:   3'- -UUGGUCCgGA-CCUCUCAugGa--CCCCA- -5'
6118 3' -60.1 NC_001826.1 + 87666 0.69 0.451571
Target:  5'- cAGCCAGGUUggGGAGGGUgacGCUUGGGa- -3'
miRNA:   3'- -UUGGUCCGGa-CCUCUCA---UGGACCCca -5'
6118 3' -60.1 NC_001826.1 + 34832 0.67 0.578712
Target:  5'- uAGCCGGGUCUGu-GAGUAUUUGGGu- -3'
miRNA:   3'- -UUGGUCCGGACcuCUCAUGGACCCca -5'
6118 3' -60.1 NC_001826.1 + 27172 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27052 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27252 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27012 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27132 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27532 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27452 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27412 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27212 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 26972 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27492 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27372 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.