miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6118 3' -60.1 NC_001826.1 + 99733 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 99533 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 99433 0.66 0.619733
Target:  5'- uGCCcGGCCcGGGGugcgGGUcccccgGCCUGGGGa -3'
miRNA:   3'- uUGGuCCGGaCCUC----UCA------UGGACCCCa -5'
6118 3' -60.1 NC_001826.1 + 27412 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27372 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27332 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27292 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27252 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27212 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27172 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27132 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27092 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27052 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27012 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 26972 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 26932 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 119442 0.67 0.588927
Target:  5'- gAGCCAGGCgaGGGGAGag---GGGGa -3'
miRNA:   3'- -UUGGUCCGgaCCUCUCauggaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27532 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27492 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5'
6118 3' -60.1 NC_001826.1 + 27452 0.67 0.588927
Target:  5'- -uCCGGGCCccagcucgGGAGGGgGCC-GGGGa -3'
miRNA:   3'- uuGGUCCGGa-------CCUCUCaUGGaCCCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.