Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 612 | 3' | -53.4 | AC_000017.1 | + | 9496 | 0.67 | 0.598852 |
|
Target: 5'- gGCGCAuggucucGGUGaCGGCGcGGCCGUucucgcgggGGCg -3' miRNA: 3'- -UGCGU-------CCAC-GUCGU-CCGGUAuaa------UCG- -5' |
|||||||
| 612 | 3' | -53.4 | AC_000017.1 | + | 10011 | 0.66 | 0.623397 |
|
Target: 5'- cUGCGGcG-GCGGCGgaguuuGGCCGUAggUGGCg -3' miRNA: 3'- uGCGUC-CaCGUCGU------CCGGUAUa-AUCG- -5' |
|||||||
| 612 | 3' | -53.4 | AC_000017.1 | + | 12689 | 0.66 | 0.635104 |
|
Target: 5'- gGCGCAGcGUgagcgcgcgcaGCAGCAGGgCAaccugGGCu -3' miRNA: 3'- -UGCGUC-CA-----------CGUCGUCCgGUauaa-UCG- -5' |
|||||||
| 612 | 3' | -53.4 | AC_000017.1 | + | 12169 | 0.66 | 0.658498 |
|
Target: 5'- cGCGCccuGGagGCAGCugGGGCCGgaccugGGCu -3' miRNA: 3'- -UGCGu--CCa-CGUCG--UCCGGUauaa--UCG- -5' |
|||||||
| 612 | 3' | -53.4 | AC_000017.1 | + | 8541 | 0.69 | 0.464974 |
|
Target: 5'- cGCGCGGcGgGCGGUGGGCCGcGggGGUg -3' miRNA: 3'- -UGCGUC-CaCGUCGUCCGGUaUaaUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home