miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
612 5' -60.9 AC_000017.1 + 12206 0.66 0.287808
Target:  5'- gCGUCGGCUuggGGCCCaGCgcaggUCAGCg- -3'
miRNA:   3'- aGCGGCUGGa--CCGGGaCGa----AGUCGgu -5'
612 5' -60.9 AC_000017.1 + 3163 0.67 0.266668
Target:  5'- cUCGCaaGGCCUGGCCagUGUUUgAGCaCAa -3'
miRNA:   3'- -AGCGg-CUGGACCGGg-ACGAAgUCG-GU- -5'
612 5' -60.9 AC_000017.1 + 28055 0.67 0.246802
Target:  5'- aCGCCGugCgccgGGCCCucgauaUGCUcuUCGGgCAa -3'
miRNA:   3'- aGCGGCugGa---CCGGG------ACGA--AGUCgGU- -5'
612 5' -60.9 AC_000017.1 + 2238 0.67 0.234251
Target:  5'- cCGCCGccGCCUGGCuuccuCCUGCUgCuGCUg -3'
miRNA:   3'- aGCGGC--UGGACCG-----GGACGAaGuCGGu -5'
612 5' -60.9 AC_000017.1 + 34169 0.68 0.22224
Target:  5'- aCGcCCGcACCUGGUuuUGCUUCAGg-- -3'
miRNA:   3'- aGC-GGC-UGGACCGggACGAAGUCggu -5'
612 5' -60.9 AC_000017.1 + 5419 0.74 0.074927
Target:  5'- cUGCCGGuCUUcGCCCUGCgcgUCGGCCAg -3'
miRNA:   3'- aGCGGCU-GGAcCGGGACGa--AGUCGGU- -5'
612 5' -60.9 AC_000017.1 + 12584 0.77 0.04702
Target:  5'- -gGCCGGCCUGGUCuacgacgcgCUGCUUCAGCg- -3'
miRNA:   3'- agCGGCUGGACCGG---------GACGAAGUCGgu -5'
612 5' -60.9 AC_000017.1 + 12626 0.79 0.033917
Target:  5'- -gGCCGGCCucaucgggccggaUGGCCCUGuUUUCGGCCAg -3'
miRNA:   3'- agCGGCUGG-------------ACCGGGAC-GAAGUCGGU- -5'
612 5' -60.9 AC_000017.1 + 10145 1.08 0.000151
Target:  5'- gUCGCCGACCUGGCCCUGCUUCAGCCAa -3'
miRNA:   3'- -AGCGGCUGGACCGGGACGAAGUCGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.