miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6121 5' -57.6 NC_001826.1 + 118890 0.66 0.763874
Target:  5'- -cGGcgGA--GGGGGUCCAGCCcccggcAGGGGg -3'
miRNA:   3'- uuCCa-CUacUCCUCAGGUCGG------UCCCU- -5'
6121 5' -57.6 NC_001826.1 + 104456 0.66 0.734312
Target:  5'- -uGGUGAUGGuGGGG-CUGGUgGGGGGg -3'
miRNA:   3'- uuCCACUACU-CCUCaGGUCGgUCCCU- -5'
6121 5' -57.6 NC_001826.1 + 118248 0.67 0.72426
Target:  5'- uGGGG-GGUGGGGGG-CUgagAGCCAGGcGAg -3'
miRNA:   3'- -UUCCaCUACUCCUCaGG---UCGGUCC-CU- -5'
6121 5' -57.6 NC_001826.1 + 119010 0.67 0.714126
Target:  5'- cGGG-GGUGGGGGGUagGGgCAGGGGu -3'
miRNA:   3'- uUCCaCUACUCCUCAggUCgGUCCCU- -5'
6121 5' -57.6 NC_001826.1 + 70427 0.68 0.619725
Target:  5'- cGGGUGGUGuAGGuucuggcuuugaaGGUUCAGCUGGGGc -3'
miRNA:   3'- uUCCACUAC-UCC-------------UCAGGUCGGUCCCu -5'
6121 5' -57.6 NC_001826.1 + 1447 0.69 0.568798
Target:  5'- gGAGGUGGUugaaaagaagGAGGAGcucggguuugccUCCuuccGCCAGGGGg -3'
miRNA:   3'- -UUCCACUA----------CUCCUC------------AGGu---CGGUCCCU- -5'
6121 5' -57.6 NC_001826.1 + 118247 0.69 0.548285
Target:  5'- gGGGGUGGagggggcugGAGGGGggaagacCCuGCCAGGGAg -3'
miRNA:   3'- -UUCCACUa--------CUCCUCa------GGuCGGUCCCU- -5'
6121 5' -57.6 NC_001826.1 + 70558 0.71 0.439939
Target:  5'- cGGGUGGUGuGGuucuggauuugaaGGUUCAGCUGGGGGa -3'
miRNA:   3'- uUCCACUACuCC-------------UCAGGUCGGUCCCU- -5'
6121 5' -57.6 NC_001826.1 + 25705 0.73 0.34642
Target:  5'- aAAGGUGAUGAGGAggcgguagacggGUCaGGUCAGGGc -3'
miRNA:   3'- -UUCCACUACUCCU------------CAGgUCGGUCCCu -5'
6121 5' -57.6 NC_001826.1 + 104732 1.06 0.001866
Target:  5'- cAAGGUGAUGAGGAGUCCAGCCAGGGAa -3'
miRNA:   3'- -UUCCACUACUCCUCAGGUCGGUCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.